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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40033
         (846 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39287| Best HMM Match : NHL (HMM E-Value=1.5e-21)                   31   1.6  
SB_30462| Best HMM Match : DUF964 (HMM E-Value=2.8)                    29   6.3  
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_39287| Best HMM Match : NHL (HMM E-Value=1.5e-21)
          Length = 645

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -3

Query: 760 GQIRRPFNKYTGGQIGPLNYYPKGHVLDKQVNINIADSG 644
           G++ R F K  G +IG   YYP G  +D++    IADSG
Sbjct: 562 GELARSFGK-VGREIGEF-YYPSGISVDEKNRFIIADSG 598


>SB_30462| Best HMM Match : DUF964 (HMM E-Value=2.8)
          Length = 204

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 672 CLSKTWPFG**FKGPICPPVYLLKGRRI-WPVPREPNP*AL 791
           C+ KTW     FKGP  P  + L+ R++  PV R   P AL
Sbjct: 159 CIFKTWTVDKYFKGP--PEKHCLRNRKVLLPVVRASKPIAL 197


>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -1

Query: 840 ARFNIPPQPFHTGPPIKGPRD*APLG 763
           A   +PP P HTGPP   P    P G
Sbjct: 423 ANMRLPPPPQHTGPPQPRPPHGMPQG 448


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,064,417
Number of Sequences: 59808
Number of extensions: 254603
Number of successful extensions: 327
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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