Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40032
         (892 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5523| Best HMM Match : Extensin_2 (HMM E-Value=0.0052)              31   1.7  
SB_8775| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.1  
SB_33029| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   8.8  

>SB_5523| Best HMM Match : Extensin_2 (HMM E-Value=0.0052)
          Length = 532

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
 Frame = +3

Query: 3   KKLKVQILVAPMMSHQNRHLSPTKQLKNLTLHQLRN--KNHQMTATVMMMLRQNLK-SSL 173
           K L   + + P   HQ  H++ T   K+LT H      + HQ     +   R++L   S+
Sbjct: 238 KHLTYHVTLTPPRKHQTYHVTLTPPRKHLTYHVTLTPPRKHQTYHVTLTPPRKHLTYHSM 297

Query: 174 LNQ*KQIQYVH-----PKKKRNHQMTI 239
           L Q ++ Q  H     P+K + + +T+
Sbjct: 298 LTQPRKHQKYHVTLTPPRKHQTYHVTL 324



 Score = 28.7 bits (61), Expect = 6.7
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
 Frame = +3

Query: 3   KKLKVQILVAPMMSHQNRHLSPTKQLKNLTLH-----QLRNKNHQMTATVMMMLRQNLKS 167
           K    Q+ + P   HQ  H+  T+  K+LT H       +N+N+ +T T      Q   S
Sbjct: 381 KNQNYQVTLTPPHKHQTYHVMLTQPSKHLTYHVTLTPPSKNQNYHVTLTPPHK-HQTYHS 439

Query: 168 SLLNQ*KQIQY----VHPKKKRNHQMTI 239
            L    K + Y      P+K + + +T+
Sbjct: 440 MLTPPRKHLTYHVTLTPPRKHQTYHVTL 467



 Score = 28.7 bits (61), Expect = 6.7
 Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
 Frame = +3

Query: 3   KKLKVQILVAPMMSHQNRHLSPTKQLKNLTLH-QLRNKNHQMTATVMMMLRQNLKSSLLN 179
           K L   + + P   HQ  H++ T   K+LT H  L   +  +T  VM+     L   L N
Sbjct: 446 KHLTYHVTLTPPRKHQTYHVTLTPPRKHLTYHSMLTQPSKHLTYHVML---TTLSKHLTN 502

Query: 180 Q*KQIQYVHPKKKRNHQMTI 239
               +    P+ K  H   I
Sbjct: 503 ---HVTLTPPELKATHNQAI 519


>SB_8775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 464

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 749 KTRVIEAVMLCDDERKNLKTWFRNLQAPLVNPVANL 856
           + R IE VM  D   K ++TWF+N +  L     N+
Sbjct: 70  RVRRIEIVMALDLSEKQVRTWFQNRRMKLKREAKNV 105


>SB_33029| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 927

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -3

Query: 278 DFCGTFFSIHHHYYRHLM 225
           D CG FF+ H H  RHLM
Sbjct: 78  DECGKFFTQHAHLKRHLM 95


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,987,239
Number of Sequences: 59808
Number of extensions: 362668
Number of successful extensions: 1065
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2550281014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)