Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40031
         (487 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9251| Best HMM Match : Ribonuc_red_sm (HMM E-Value=0)               30   0.88 
SB_17041| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  
SB_11213| Best HMM Match : RVT_1 (HMM E-Value=6.4e-38)                 27   6.2  
SB_5957| Best HMM Match : Chitin_synth_1 (HMM E-Value=9)               27   6.2  
SB_14846| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_57159| Best HMM Match : PI-PLC-X (HMM E-Value=0)                    27   8.2  
SB_47849| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_9251| Best HMM Match : Ribonuc_red_sm (HMM E-Value=0)
          Length = 928

 Score = 30.3 bits (65), Expect = 0.88
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -2

Query: 255 CKRNKLSSGMVRPLYIHRHVLLLSRLHPSRFHSNTPESGLSIF*P 121
           C+   LSS   + LY+  HV  +S  HPSR +   P     +F P
Sbjct: 501 CRTGPLSSLSAKILYMREHVAAVS--HPSRSYYQMPSDSNCVFGP 543


>SB_17041| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 668

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +3

Query: 264 ERSMKIIESSVKLQLRLSRKT*TWSLLSRAAERKMEIPR*IKCSNTSSASRKTRLC 431
           ER  KII+ + + + + + K  + S++ RA ++K+++   IKC      S     C
Sbjct: 437 EREEKIIQETKECEEQKATKRKSSSVIIRAKKQKLQLSHQIKCGGNGYWSSPFMKC 492


>SB_11213| Best HMM Match : RVT_1 (HMM E-Value=6.4e-38)
          Length = 510

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 403 EVFEHLIYRGISIFLSAALDNSDHVYVFRERRSC 302
           ++ EH++   I+  L A    SD  + FR++RSC
Sbjct: 127 KILEHIVCSHINRHLEAHQILSDRQHAFRKKRSC 160


>SB_5957| Best HMM Match : Chitin_synth_1 (HMM E-Value=9)
          Length = 416

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 403 EVFEHLIYRGISIFLSAALDNSDHVYVFRERRSC 302
           ++ EH++   I+  L A    SD  + FR++RSC
Sbjct: 259 KILEHIVCSHINRHLEAHQILSDRQHAFRKKRSC 292


>SB_14846| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = +3

Query: 84  EDSRKLVSFAPEVAKKLKVLIQECLNENGLGEDAIEVIRAGEYREDE 224
           E SR LV+    +   LKVLI+     N    DA +   AGE RED+
Sbjct: 78  ESSRFLVTKG-RIEDALKVLIKYGPKHNNNAVDAAKYRDAGEIREDQ 123


>SB_57159| Best HMM Match : PI-PLC-X (HMM E-Value=0)
          Length = 1289

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = +2

Query: 227 IPELSLLRLQKFGALDENNRIISQ 298
           +PE++LLR   F  +D+N+RII+Q
Sbjct: 867 LPEMALLR---FAVIDDNDRIIAQ 887


>SB_47849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1922

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = +1

Query: 316  PERHRRGHCYRELRKGRWK--YPG 381
            PER  RGHC R+   GR    YPG
Sbjct: 1536 PERSSRGHCCRKWSTGRVTEVYPG 1559


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,754,291
Number of Sequences: 59808
Number of extensions: 307105
Number of successful extensions: 790
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)