Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40030
(879 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30492| Best HMM Match : No HMM Matches (HMM E-Value=.) 102 3e-22
SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0) 37 0.025
SB_42943| Best HMM Match : WD40 (HMM E-Value=0) 36 0.043
SB_10223| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.043
SB_39225| Best HMM Match : NIF (HMM E-Value=0) 35 0.075
SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.075
SB_56678| Best HMM Match : WD40 (HMM E-Value=6.4e-22) 34 0.13
SB_34371| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.13
SB_18573| Best HMM Match : WD40 (HMM E-Value=1.5e-06) 33 0.23
SB_57108| Best HMM Match : WD40 (HMM E-Value=7.00649e-45) 32 0.70
SB_37154| Best HMM Match : WD40 (HMM E-Value=7.00649e-45) 32 0.70
SB_14873| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.70
SB_5612| Best HMM Match : WD40 (HMM E-Value=4.4e-18) 32 0.70
SB_32324| Best HMM Match : WD40 (HMM E-Value=6.4e-21) 31 0.93
SB_30344| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_17334| Best HMM Match : WD40 (HMM E-Value=3.1e-30) 30 2.1
SB_4488| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.8
SB_49401| Best HMM Match : WD40 (HMM E-Value=1.6e-22) 29 3.7
SB_42279| Best HMM Match : WD40 (HMM E-Value=2.2e-10) 29 3.7
SB_29857| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_9416| Best HMM Match : WD40 (HMM E-Value=0) 29 3.7
SB_39595| Best HMM Match : WD40 (HMM E-Value=1.10001e-40) 29 5.0
SB_5842| Best HMM Match : WD40 (HMM E-Value=6.7e-21) 29 5.0
SB_36541| Best HMM Match : WD40 (HMM E-Value=0) 29 6.6
SB_13993| Best HMM Match : WD40 (HMM E-Value=2.6e-10) 29 6.6
SB_23925| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_23517| Best HMM Match : WD40 (HMM E-Value=0) 28 8.7
SB_10932| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
>SB_30492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 257
Score = 102 bits (245), Expect = 3e-22
Identities = 48/87 (55%), Positives = 57/87 (65%)
Frame = +3
Query: 258 YLLVSSWDCSVRLYDVTANIERHKYNHELPVLDVCFRDAVHSYSGGLDQTLKMYDLNAST 437
+LLVSSWD SVRLYDV + R KYNH VLD CF+DAVH++SGGLD LKM DLN +
Sbjct: 31 FLLVSSWDTSVRLYDVQNDDMRLKYNHSYSVLDCCFQDAVHAFSGGLDNNLKMCDLNQNQ 90
Query: 438 ETILGEHKGAIRCVEFASELNAVLQEA 518
+G H IRCV++ L EA
Sbjct: 91 VQTIGSHDDPIRCVDYCQPLGVCAAEA 117
Score = 43.6 bits (98), Expect = 2e-04
Identities = 24/43 (55%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Frame = +1
Query: 736 CFPI--SRGYVSAPLEGRVAVEYFGXVNPEVPKKKLCLSNAHR 858
C+PI S+GYV + +EGRVAVEYF +PEV KKK HR
Sbjct: 137 CYPIFKSQGYVLSSIEGRVAVEYFDP-SPEVQKKKFAF-KCHR 177
Score = 35.1 bits (77), Expect = 0.075
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +1
Query: 178 ESRTEFKLKSLPEDAISSVKFAPKSNS 258
E EFKL PED IS+VKF+P S+S
Sbjct: 4 ECPNEFKLGQAPEDGISAVKFSPTSSS 30
>SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0)
Length = 1066
Score = 36.7 bits (81), Expect = 0.025
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSIV 613
TGS DGTV++W + T N G ERV++MS++
Sbjct: 144 TGSEDGTVRVWHANTYRLESTLNYGLERVWSMSMM 178
>SB_42943| Best HMM Match : WD40 (HMM E-Value=0)
Length = 273
Score = 35.9 bits (79), Expect = 0.043
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +3
Query: 255 QYLLVSSWDCSVRLYDVTANIERHKY-NHELPVLDVCF-RDAVHSYSGGLDQTLKMYDLN 428
Q+ L SWD ++RL+D+ A + ++ H VL V F D SG D +K+++
Sbjct: 113 QFALSGSWDKTLRLWDLNAGVTTRRFVGHTKDVLSVAFSADNRQIVSGARDHHIKLWNTL 172
Query: 429 ASTETILGEHKGAIRCVEFASE 494
+ + E ++ + SE
Sbjct: 173 GVCKYTIQEETHSVEPDQLPSE 194
>SB_10223| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 945
Score = 35.9 bits (79), Expect = 0.043
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +3
Query: 261 LLVSSWDCSVRLYDVTANIERHK-YNHELPVLDVCFRDAVHSYSGGLDQTLKMYDLNA-S 434
++ SWD ++ ++ + H Y H+ V + F D SG D T++++D+
Sbjct: 575 IISGSWDMTIMVWHIVKFTRLHVLYGHKGCVSCLRF-DENTLVSGSHDSTIRVWDMRTWE 633
Query: 435 TETILGEHKGAIRCVEF 485
+L H+GA+ C+EF
Sbjct: 634 CVLVLQGHEGAVSCLEF 650
Score = 31.5 bits (68), Expect = 0.93
Identities = 14/38 (36%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Frame = +3
Query: 387 SGGLDQTLKMYDLNA--STETILGEHKGAIRCVEFASE 494
+G D+T++M+D+ + S + G HKG +RC++F +E
Sbjct: 537 TGSSDRTIRMWDVRSGRSIRKMKG-HKGGVRCLQFDNE 573
Score = 31.5 bits (68), Expect = 0.93
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSIVGEKFVVGTSGRKNICMGRS*HGAC 685
+GS D T+++WD R CV QG+E + FV+ S K I + G C
Sbjct: 617 SGSHDSTIRVWDMRTWECV-LVLQGHEGAVSCLEFDAPFVLSGSADKTIKLWNVESGDC 674
>SB_39225| Best HMM Match : NIF (HMM E-Value=0)
Length = 1772
Score = 35.1 bits (77), Expect = 0.075
Identities = 20/95 (21%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Frame = +3
Query: 261 LLVSSWDCSVRLYDVTANIERHKYNHELPVLDVCFRDAVHS--YSGGLDQTLKMYDLNAS 434
++ +S D ++RL+D ++ + Y ++ C + SGG D+TL M+D+
Sbjct: 54 IVTASHDKTIRLWDASSGNQLKVYTGHTSIITSCHPNTTSRKLISGGWDKTLIMWDVETG 113
Query: 435 TETILGEHKGAIRCVEFASELNAVLQEAGMEQSKC 539
+G + F+S+ V+ ++ + C
Sbjct: 114 CALWQAVQEGIVTTCHFSSDGKYVVSGNDLDYAVC 148
>SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 459
Score = 35.1 bits (77), Expect = 0.075
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +2
Query: 500 CSATGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMS 607
C+++ S+D TV++WD C+ ++ +E VYT+S
Sbjct: 305 CASSASYDTTVRLWDVERGGCLQVLSKHHEPVYTIS 340
>SB_56678| Best HMM Match : WD40 (HMM E-Value=6.4e-22)
Length = 834
Score = 34.3 bits (75), Expect = 0.13
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 506 ATGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSIVGE-KFVVGTSG 643
ATG +G+VK+WDSR CV + + + M + K ++ TSG
Sbjct: 148 ATGDDEGSVKVWDSRTVACVMEMKENEDFISDMECDSDCKLLLATSG 194
>SB_34371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 644
Score = 34.3 bits (75), Expect = 0.13
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSIVGEKFVVGT 637
+G++D VK+WD C+ T RVY++ G V G+
Sbjct: 454 SGAYDFLVKVWDPETEQCIHTLQGHTNRVYSLQFDGTYIVSGS 496
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSIVGEKFVVGTSGR 646
+GS DGT+K+W + C+ T V++ + G V G++ R
Sbjct: 334 SGSDDGTLKVWSALSGKCLRTLTGHTGGVWSSQLSGHIIVSGSTDR 379
Score = 28.3 bits (60), Expect = 8.7
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCV 565
+GS DGT+++WD+ NC+
Sbjct: 414 SGSRDGTLRVWDTTTGNCL 432
>SB_18573| Best HMM Match : WD40 (HMM E-Value=1.5e-06)
Length = 76
Score = 33.5 bits (73), Expect = 0.23
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +2
Query: 515 SWDGTVKMWDSRVPNCVGTYNQGNERVYTMSIVGEKFVVGTSGRKNICMGRS*H-GAC 685
SWD ++++WD+ C T +E Y EK V G G N+ M S H G C
Sbjct: 10 SWDESIRLWDTTSGTCSLTLRGHSEVAYCCQFDDEKVVTG--GGDNLIMVWSAHTGEC 65
Score = 29.9 bits (64), Expect = 2.8
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +3
Query: 258 YLLVSSWDCSVRLYDVTANIERHKYNHELPVLDVCFRDAVHSYSGGLDQTLKMYDLNAS- 434
Y++ +SWD S+RL+D T+ V C D +GG D + ++ +
Sbjct: 5 YVISTSWDESIRLWDTTSGTCSLTLRGHSEVAYCCQFDDEKVVTGGGDNLIMVWSAHTGE 64
Query: 435 -TETILGEHKGAI 470
T T+ G H G +
Sbjct: 65 CTATLSG-HTGEV 76
>SB_57108| Best HMM Match : WD40 (HMM E-Value=7.00649e-45)
Length = 243
Score = 31.9 bits (69), Expect = 0.70
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSIVGEKFVVGT 637
+GS+D T+K+WD + NC T N V + K V G+
Sbjct: 99 SGSYDKTLKVWDIKTGNCKLTLRGHNAAVLCVQFDESKIVSGS 141
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +3
Query: 369 DAVHSYSGGLDQTLKMYDL---NASTETILGEHKGAIRCV 479
D SG D+T+K++DL + S L H G +RC+
Sbjct: 35 DDTRIVSGSSDKTIKVWDLSREDTSAVLTLAGHSGTVRCL 74
>SB_37154| Best HMM Match : WD40 (HMM E-Value=7.00649e-45)
Length = 870
Score = 31.9 bits (69), Expect = 0.70
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSIVGEKFVVGT 637
+GS+D T+K+WD + NC T N V + K V G+
Sbjct: 726 SGSYDKTLKVWDIKTGNCKLTLRGHNAAVLCVQFDESKIVSGS 768
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +3
Query: 369 DAVHSYSGGLDQTLKMYDL---NASTETILGEHKGAIRCV 479
D SG D+T+K++DL + S L H G +RC+
Sbjct: 662 DDTRIVSGSSDKTIKVWDLSREDTSAVLTLAGHSGTVRCL 701
>SB_14873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 31.9 bits (69), Expect = 0.70
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSIVGEKFVVG 634
+GS D T+++WD R PNC G + V G F G
Sbjct: 239 SGSLDCTLRIWDLRSPNCQGLMHVNGRPVAAFDPEGLIFAAG 280
>SB_5612| Best HMM Match : WD40 (HMM E-Value=4.4e-18)
Length = 736
Score = 31.9 bits (69), Expect = 0.70
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = +3
Query: 261 LLVSSWDCSVRLYDVTANIERHKY-NHELPVLDVC--FRDAVHSYSGGLDQTLKMYDLNA 431
L+ SS+D S +++DV N Y H V+ VC + D +SGG D T++ + ++
Sbjct: 38 LVTSSYDGSAQVWDVETNQPIANYRGHVGRVMSVCWSYLDPDVVFSGGEDGTVRPWRVSL 97
Query: 432 STET 443
T T
Sbjct: 98 QTHT 101
>SB_32324| Best HMM Match : WD40 (HMM E-Value=6.4e-21)
Length = 123
Score = 31.5 bits (68), Expect = 0.93
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 255 QYLLVSSWDCSVRLYDVTANIERHKY-NHELPVLDVCF 365
Q+ L SWD ++RL+D+ A + ++ H VL V F
Sbjct: 76 QFALSGSWDKTLRLWDLNAGVTTRRFVGHTKDVLSVAF 113
>SB_30344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 418
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 506 ATGSWDGTVKMWDSRVPNCVGTYNQGNERVY 598
AT S DGTVK+WD CV T+ V+
Sbjct: 219 ATSSGDGTVKIWDFSKAECVLTFADHTHAVW 249
>SB_17334| Best HMM Match : WD40 (HMM E-Value=3.1e-30)
Length = 1292
Score = 30.3 bits (65), Expect = 2.1
Identities = 13/50 (26%), Positives = 21/50 (42%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSIVGEKFVVGTSGRKNIC 658
+G+ D + K+WD R CV T+ + ++ F GT C
Sbjct: 130 SGACDASAKLWDIRGGTCVQTFTGHESDINAVAFFPSGFAFGTGSDDATC 179
>SB_4488| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 30.3 bits (65), Expect = 2.1
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSIVGEKFVVGT 637
+GS+ T+K+WD CV VY++++ E + GT
Sbjct: 554 SGSYQ-TIKLWDLDTLECVRVLQTSGGSVYSLAVTKEYIICGT 595
>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 506 ATGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSI 610
A+GS D TV++WD R C+ G+ V ++ +
Sbjct: 1162 ASGSNDNTVRLWDLRSQRCIDAIATGDSCVSSVCV 1196
>SB_49401| Best HMM Match : WD40 (HMM E-Value=1.6e-22)
Length = 453
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +2
Query: 506 ATGSWDGTVKMWDSRVPNCVGTYNQ-GNER-VYTMS 607
AT S+DGTVK+WD V G ++ GNE +Y +S
Sbjct: 386 ATASFDGTVKVWD--VDTLSGVHSSPGNEGIIYALS 419
>SB_42279| Best HMM Match : WD40 (HMM E-Value=2.2e-10)
Length = 291
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +2
Query: 506 ATGSWDGTVKMWDSRVPNCVGTYNQ-GNER-VYTMS 607
AT S+DGTVK+WD V G ++ GNE +Y +S
Sbjct: 224 ATASFDGTVKVWD--VDTLSGVHSSPGNEGIIYALS 257
>SB_29857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1264
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +3
Query: 387 SGGLDQTLKMYDLNASTE--TILGEHKGAIRCVEFASEL 497
SG D ++K++DL S T + EH+ A+ C+E+ ++
Sbjct: 211 SGSWDNSVKVWDLRGSIVEMTSIREHRAAVLCMEWKQDV 249
>SB_9416| Best HMM Match : WD40 (HMM E-Value=0)
Length = 700
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTYNQGNERVYTM 604
+GS DGTV++W CV Y E V+ +
Sbjct: 228 SGSSDGTVRLWSLGQQRCVAVYRIHEEGVWAL 259
>SB_39595| Best HMM Match : WD40 (HMM E-Value=1.10001e-40)
Length = 260
Score = 29.1 bits (62), Expect = 5.0
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSIVGEKFVVGT-SGRKNICMGRS*HGAC 685
+GSWD T K+W P CV T + V+ + ++ + ++ T S K I + ++ G+C
Sbjct: 123 SGSWDKTAKVWLG--PKCVMTLEGHDAAVWAVLLMPDHGLMLTGSADKTIKLWKA--GSC 178
Query: 686 KS 691
+S
Sbjct: 179 QS 180
>SB_5842| Best HMM Match : WD40 (HMM E-Value=6.7e-21)
Length = 759
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTYNQGNERV-YTMSIVGEK-----FVVGTSGRKNICMGR 667
+ +D VK+WD+ C+G Y N+++ Y + ++ FV GTS +K + + R
Sbjct: 150 SAGYDRYVKLWDTETGECLGRYT--NKKIPYCVKFNPDEDKQHLFVCGTSDKKILTVNR 206
>SB_36541| Best HMM Match : WD40 (HMM E-Value=0)
Length = 1070
Score = 28.7 bits (61), Expect = 6.6
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +3
Query: 258 YLLVSSWDCSVRLYDVTANIERHKYN-HELPVLDV-CFRDAVHSYSGGLDQTLKMYDLNA 431
+++ S D +VR +D+ + H PVL + D SG D+ L+++DL +
Sbjct: 351 WVISGSDDSTVRAWDLENGESCAVFQGHSKPVLCLQIINDGQAIVSGSEDKVLRVWDLVS 410
Query: 432 STETILGEHKGAIRCV 479
L H G I+C+
Sbjct: 411 RDCVSLKGHGGLIKCL 426
>SB_13993| Best HMM Match : WD40 (HMM E-Value=2.6e-10)
Length = 73
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTYNQGNE 589
TGS DGT K++D++ C TY +G+E
Sbjct: 3 TGSGDGTAKVFDAKSGTCKRTY-KGHE 28
>SB_23925| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 217
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 874 LPSFKPGGHLKGIISSSAPQDLXTQNTPP 788
+P P H+ I+SSS+ L QN+PP
Sbjct: 153 VPRMPPPTHISHILSSSSLAHLKVQNSPP 181
>SB_23517| Best HMM Match : WD40 (HMM E-Value=0)
Length = 860
Score = 28.3 bits (60), Expect = 8.7
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +3
Query: 261 LLVSSWDCSVRLYDVTANIERHKYNHELPVLDVCF-RDAVHSYSGGLDQTLKMYDLNAST 437
+L S DC VR YD+ E PV V F +D LD T+++ D T
Sbjct: 713 ILSGSVDCKVRNYDIRMGTMHADCIGE-PVTSVTFTQDGQCILVSSLDNTVRLMD--KDT 769
Query: 438 ETILGEHKG 464
+L E KG
Sbjct: 770 GELLNEFKG 778
>SB_10932| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 494
Score = 28.3 bits (60), Expect = 8.7
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +2
Query: 575 NQGNERVYTMSIVGEKFVVGTSGRKNICMGRS*HGACKSKEGSSLQYPTTMPTSVSP 745
NQG+ T+SI GEKF + ++G+ + + A SS + P T +S SP
Sbjct: 401 NQGSPPSVTLSIRGEKFTMDSNGKTLRRINKEKPNAM----ASSSETPNTNQSSASP 453
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,453,739
Number of Sequences: 59808
Number of extensions: 662344
Number of successful extensions: 1588
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1585
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2502612210
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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