Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40028
         (904 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14072| Best HMM Match : ELO (HMM E-Value=5.7)                       31   1.3  
SB_51424| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_6267| Best HMM Match : DUF930 (HMM E-Value=3.6)                     30   2.9  
SB_52932| Best HMM Match : Ank (HMM E-Value=0)                         29   3.9  
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.8  
SB_27213| Best HMM Match : DUF1416 (HMM E-Value=0.18)                  29   6.8  

>SB_14072| Best HMM Match : ELO (HMM E-Value=5.7)
          Length = 226

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -3

Query: 548 SLFRNISMDNGVPD*PRSRPIPAFRFA*RWLP 453
           SLF  +  +  +P+ P+SRPI A   A R+LP
Sbjct: 29  SLFNTLFCERTLPEVPKSRPITAIHTACRYLP 60


>SB_51424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 62

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 541 NNESASVYGLLVNYMHVTDTGKQQETINSETDVPS 645
           N++  S YG L + + +   GKQ   +NSE ++PS
Sbjct: 13  NSKKRSSYGFLDSSLSLQGLGKQFVRLNSENEIPS 47


>SB_6267| Best HMM Match : DUF930 (HMM E-Value=3.6)
          Length = 502

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
 Frame = -2

Query: 369 ESLFVRLWCFPLKTQRTEIA-------SRFPSRPSISMLW*NVRLLISY*APGSLHI 220
           E LFV  +CFP    R  +         RF SR  +   W + R+L S+   GS  +
Sbjct: 304 EGLFVCFFCFPFVHYRNSVGLISGTPRYRFGSRDQLGYFWGSFRVLASFRVLGSFRV 360


>SB_52932| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1266

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -1

Query: 538 GISPWTTACLTDR-DLARYLLSVLLDDGSQDRLWCLPFFITSDVQHVGLVEV 386
           G++P   ACL     + + LL    D G  DR    P F  +   HVG+V++
Sbjct: 713 GMTPLCVACLEGHYSIVKLLLEFNADAGHWDRNGRTPLFAAAASGHVGVVKM 764


>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6753

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +3

Query: 159  CRPEFNGKVATFILDLQDPHKCGVTRVLNKISAVERSTT 275
            C  EF GK    + D  +P  CG     N +SAV  + T
Sbjct: 3081 CTSEFTGKNCEIVRDACNPTPCGNGATCNILSAVNYTCT 3119


>SB_27213| Best HMM Match : DUF1416 (HMM E-Value=0.18)
          Length = 752

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 669 RSSQTDTGRRNIRFRIYRFLLFPGVGDV 586
           R +   TG  NIR ++  F L+P VG V
Sbjct: 213 RGADVSTGAPNIRLQLGMFTLYPAVGSV 240


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,626,638
Number of Sequences: 59808
Number of extensions: 694398
Number of successful extensions: 1755
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1754
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2597949818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)