Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40022
         (710 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38780| Best HMM Match : Astacin (HMM E-Value=0)                     32   0.53 
SB_15413| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.53 

>SB_38780| Best HMM Match : Astacin (HMM E-Value=0)
          Length = 1153

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 99  IIXCTPHSRVGHSRKIECPLISVL 28
           ++ C PHSR+     IECP +SVL
Sbjct: 683 MLTCQPHSRMKEMPNIECPTVSVL 706



 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 99  IIXCTPHSRVGHSRKIECPLISVLCGM 19
           ++ C PHSR+     IECP  +   G+
Sbjct: 52  MLTCQPHSRMKEMPNIECPTSACFAGV 78


>SB_15413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 99  IIXCTPHSRVGHSRKIECPLISVL 28
           ++ C PHSR+     IECP +SVL
Sbjct: 92  MLICQPHSRMKEMPNIECPTVSVL 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,432,986
Number of Sequences: 59808
Number of extensions: 269826
Number of successful extensions: 443
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)