Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40016
         (774 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12466| Best HMM Match : Transferrin (HMM E-Value=4.4e-21)           66   2e-11
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.26 
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)                   33   0.26 
SB_23918| Best HMM Match : rve (HMM E-Value=0.013)                     30   2.4  
SB_6029| Best HMM Match : TOM20_plant (HMM E-Value=2.4)                30   2.4  
SB_4906| Best HMM Match : Trypsin (HMM E-Value=0)                      30   2.4  
SB_19405| Best HMM Match : DMP1 (HMM E-Value=3.8)                      29   5.5  
SB_45153| Best HMM Match : rve (HMM E-Value=0)                         29   5.5  
SB_10891| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_43248| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_5617| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.3  

>SB_12466| Best HMM Match : Transferrin (HMM E-Value=4.4e-21)
          Length = 291

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 44/122 (36%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
 Frame = +3

Query: 39  CNGAHAAAEYWTKSCAPGALSSEYVDSGSLPYDNLXHLSHGASFRRCRRDASEQYFGHVG 218
           C+  ++A E++ KSC PG   +    + +L    L  L    S   C  D SE+Y+G+ G
Sbjct: 165 CDVYNSAGEFFGKSCVPGVFDA----ANNLNNTKLPSLCGACSNPTCPGDESERYYGYNG 220

Query: 219 AVRCMVEGGGDVAFVRHTXPAEVSAGRRREFWARDLLPD-DLQSLCPHGTRAKMQLYRHX 395
           +  C+VEG G+VAFVRHT   E +          DL P  D + LCP GT    QL  + 
Sbjct: 221 SYVCLVEGRGEVAFVRHTTVFEYTG------VINDLNPGFDFKLLCPDGTVKGDQLSAYR 274

Query: 396 NL 401
            L
Sbjct: 275 RL 276


>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 29/113 (25%), Positives = 42/113 (37%)
 Frame = +1

Query: 31  RTVATGPTQQPSTGPSPAHPER*ALNTWTRAACLTTTSXT*VMVPLSDVVGATRASSTSV 210
           RT +T  T  PST  +     R    +  RA   TTTS      P +     T A STS 
Sbjct: 43  RTGSTTTTSAPSTSTTSNSTTRAPSTSTPRAGSTTTTSAPSTSTPRTGSTTTTSAPSTST 102

Query: 211 TWARCGAWWRGAGTWPSSATPXPQRCPPDDAASSGRATSCPTTCNLYVHTAPA 369
              R G+    +    S+ +    R P      +G   +  T+    + T P+
Sbjct: 103 --PRTGSTTTTSAPSTSTTSNSTTRAPSTSTPRTGSTITLRTSTTSVMTTTPS 153


>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
          Length = 2049

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +1

Query: 256  PSSATPXPQRCPPDDAASSGRATS-CPTTCNLYVHTAPAPKCNCTDTXTSARSQDRS*WG 432
            P SAT   +  P  D++   R  S  P T      T  A +   TD+  S+RS  R+ W 
Sbjct: 1802 PGSATKKTK--PKQDSSKKKRKRSPSPATSASREGTRKAKRPRLTDSAKSSRSALRNCWE 1859

Query: 433  GRIIQNSTLFR 465
            GR ++ S+L R
Sbjct: 1860 GRSVRASSLLR 1870


>SB_23918| Best HMM Match : rve (HMM E-Value=0.013)
          Length = 1785

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 20/64 (31%), Positives = 30/64 (46%)
 Frame = +2

Query: 17   RMDQAVRLQRGPRSSRVLDQVLRTRSVEL*IRGLGQLALRQPLSLKSWCLFQTLSARRER 196
            R +Q++   R P  S         ++ EL   G G LA+  P S   WC F   ++RR  
Sbjct: 1398 RPEQSLGSMRAPELSDYYIPSKTQKNAELAYIGAGALAIGYPASRLLWCSF--AASRRPF 1455

Query: 197  AVLR 208
            ++LR
Sbjct: 1456 SILR 1459


>SB_6029| Best HMM Match : TOM20_plant (HMM E-Value=2.4)
          Length = 358

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 20/64 (31%), Positives = 30/64 (46%)
 Frame = +2

Query: 17  RMDQAVRLQRGPRSSRVLDQVLRTRSVEL*IRGLGQLALRQPLSLKSWCLFQTLSARRER 196
           R +Q++   R P  S         ++ EL   G G LA+  P S   WC F   ++RR  
Sbjct: 143 RPEQSLGSMRAPELSDYYIPSKTQKNAELAYIGAGALAIGYPASRLLWCSF--AASRRPF 200

Query: 197 AVLR 208
           ++LR
Sbjct: 201 SILR 204


>SB_4906| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 530

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/51 (25%), Positives = 20/51 (39%)
 Frame = +1

Query: 247 GTWPSSATPXPQRCPPDDAASSGRATSCPTTCNLYVHTAPAPKCNCTDTXT 399
           G+ P + TP P   PP    ++   T  P T    +   P+  C    + T
Sbjct: 168 GSCPGTVTPVPTAPPPPPTTTAAITTKVPVTTRAPITQPPSGSCGSKPSGT 218


>SB_19405| Best HMM Match : DMP1 (HMM E-Value=3.8)
          Length = 551

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 406 LPRLXCLYNCILARVPCGHR 347
           LPR  C +   LAR+PC HR
Sbjct: 160 LPRTPCEHRLHLARIPCEHR 179


>SB_45153| Best HMM Match : rve (HMM E-Value=0)
          Length = 2264

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +3

Query: 390  HXNLGKVPGSVLMGRANHTELD 455
            H N GK PG +LM R   T LD
Sbjct: 1033 HANTGKTPGELLMNRKLKTRLD 1054


>SB_10891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 929

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 244 AGTWPSSATPXPQRCPPDDAASSGRATSCPTTCNLYVHT 360
           A  WP+ A P P RC      S+ +A++      +  HT
Sbjct: 722 ASGWPAGAPPTPTRCSTSTITSATKASAGGKVSEMKPHT 760


>SB_43248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 871

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 355 GHRDCRSSGKRSRAQNSRRRPADTSAGMVWRTKATS 248
           G ++CR++  R  A N    P  TSA  VW  + +S
Sbjct: 734 GKKNCRATSTRRSALNHSLDPCKTSAWNVWFPEVSS 769


>SB_5617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 69

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 685 MRLEVRRMTQWCRT*QSRASNYLC 614
           MR+ +RR T+WC+    RA + +C
Sbjct: 1   MRISLRRRTRWCQRRNMRALSSIC 24


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,486,391
Number of Sequences: 59808
Number of extensions: 533873
Number of successful extensions: 1758
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1755
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)