SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40005
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49876| Best HMM Match : No HMM Matches (HMM E-Value=.)              91   6e-19
SB_31035| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.31 
SB_20284| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_17433| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_11769| Best HMM Match : Complex1_17_2kD (HMM E-Value=6.6)           29   5.0  
SB_22527| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_13109| Best HMM Match : Dynein_heavy (HMM E-Value=2.6e-09)          28   6.6  
SB_11968| Best HMM Match : zf-TRAF (HMM E-Value=0.32)                  28   6.6  
SB_290| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   6.6  
SB_32246| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_20706| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_5065| Best HMM Match : Histone (HMM E-Value=2.6e-33)                28   8.7  
SB_44210| Best HMM Match : Ubiq_cyt_C_chap (HMM E-Value=2.3)           28   8.7  
SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_24673| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_7171| Best HMM Match : Nodulin_late (HMM E-Value=0.25)              28   8.7  

>SB_49876| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 801

 Score = 91.5 bits (217), Expect = 6e-19
 Identities = 44/86 (51%), Positives = 52/86 (60%)
 Frame = +1

Query: 361 GAPALPHRMLAICDISADPGGSIEFMNECTTIDTPFCLYDADRNKDTKSSKVQEYLCVPS 540
           G P LPHR+LAICDISADP GS+EFM ECTTI+ PF LYD               L    
Sbjct: 248 GCPNLPHRLLAICDISADPDGSLEFMKECTTIEYPFHLYDIKTGTSQIGMAGDGVLICSI 307

Query: 541 ITCQLQLPRESTDFFGDLLYPYAEDI 618
                QLPRE+TD+FG LL P+  ++
Sbjct: 308 DNVPAQLPREATDYFGKLLLPWLPEM 333


>SB_31035| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 282

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +1

Query: 310 CEHLIMPAHTPWLPKSIGAPALPHRMLAICDISA 411
           C   + P  TP  P SIG  A   R+  ICDI A
Sbjct: 171 CVAAVCPPQTPTAPASIGGDAQSFRLQKICDIQA 204


>SB_20284| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3307

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 241  GAIFVSEPSSSLPRSTLRGSCGDPISDPE 155
            G    +EP   +  + +R   GDPISDPE
Sbjct: 2553 GVKMTNEPPKGIRANIIRSYLGDPISDPE 2581


>SB_17433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1924

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +2

Query: 281  DSPKLLTIPDANTSSCRHIPRGYRRASEPRRYRTECWQSVTYQQTLE 421
            D   L+  P A T+ CRHIP+ Y  ++  R   T+C Q +T    L+
Sbjct: 1817 DKHNLVVKPSA-TNYCRHIPQQYPEST--RGTTTQCLQPITRATELD 1860


>SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2201

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 10/18 (55%), Positives = 17/18 (94%)
 Frame = +1

Query: 478  DADRNKDTKSSKVQEYLC 531
            +A +N+DTKSS++Q++LC
Sbjct: 1382 EAIKNRDTKSSQIQQWLC 1399


>SB_11769| Best HMM Match : Complex1_17_2kD (HMM E-Value=6.6)
          Length = 355

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
 Frame = +1

Query: 169 WGHRSFRARLSVVRRTTVQIQRSHRTHPCGQLHLLGS*QSETTHDT*CEHLIMPAHTP-- 342
           W    FR R  VVR     +   HR +P  +L   G  +++T H     +L MPA  P  
Sbjct: 279 WAVSMFRGRNVVVRTPENDLAHDHRNNP--RLACAG--RAQTYH----HYLCMPAEKPIE 330

Query: 343 -WLPKSIG 363
            W P  +G
Sbjct: 331 EWRPSELG 338


>SB_22527| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -1

Query: 283 VNCPIDAVDHTDVYGAIFVSEPSSSLPRSTLRGSCGDPISDPEEED 146
           VN P+DA    D  G   VS  +   P+S    +  D I D EE+D
Sbjct: 681 VNTPMDANTKKDNSGIELVSLYTGDKPQSERGAAENDGIEDEEEDD 726


>SB_13109| Best HMM Match : Dynein_heavy (HMM E-Value=2.6e-09)
          Length = 1703

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 241  GAIFVSEPSSSLPRSTLRGSCGDPISDPEEEDTC 140
            G    +EP + L ++ L+    DPISDPE  + C
Sbjct: 1665 GVKMTNEPPTGLRQNLLQSYITDPISDPEFFNGC 1698


>SB_11968| Best HMM Match : zf-TRAF (HMM E-Value=0.32)
          Length = 144

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 386 ILCGNAGAPMLFGNHGVCAGMMRCSHQV 303
           + C N G PM   + G  A ++ C +QV
Sbjct: 77  VRCENVGCPMRIAHRGQAAQILECQYQV 104


>SB_290| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
 Frame = +2

Query: 347 YRRASEPRRY----RTECWQSVTYQQTL 418
           YRRA++P       R  CW SV Y+QTL
Sbjct: 105 YRRANDPADNVLCARQGCWSSVMYRQTL 132


>SB_32246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +1

Query: 337 TPWLPKSIGAPALPHRMLAICDISA 411
           TP  P SIG  A   R+  ICDI A
Sbjct: 122 TPTAPASIGGDAQSFRLQKICDIQA 146


>SB_20706| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 588

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +2

Query: 227 YKDRTVHIRVVNCIYWAVDSPKLLTIPDANTSSCRHIPRG 346
           Y +R    R V C+ W+   P+LL     N     H P G
Sbjct: 236 YDERWSRHRTVTCLDWSNQYPELLVASYNNNEDAPHEPDG 275


>SB_5065| Best HMM Match : Histone (HMM E-Value=2.6e-33)
          Length = 330

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 333 TYPVVTEEHRSPGVTAQNAGNL*HIS 410
           TYPV + ++  P  TAQ  GN  HIS
Sbjct: 180 TYPVTSNQNDDPEATAQGVGN--HIS 203


>SB_44210| Best HMM Match : Ubiq_cyt_C_chap (HMM E-Value=2.3)
          Length = 368

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 595 LYPYAEDIMKSDATKPLEEHKFLLRCLWVY 684
           LY  A D +      PLE+ +FL RC++V+
Sbjct: 262 LYSSATDALAKLKWLPLEKRRFLRRCVYVF 291


>SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1050

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 511 LNSSYPCFCQRHTNRRACRL*CTHS 437
           L+ +Y  FC+RH   RAC + C+++
Sbjct: 57  LDLTYEVFCERHYYGRACDVYCSYT 81


>SB_24673| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 732

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 333 TYPVVTEEHRSPGVTAQNAGNL*HIS 410
           TYPV + ++  P  TAQ  GN  HIS
Sbjct: 180 TYPVTSNQNDDPEATAQGVGN--HIS 203


>SB_7171| Best HMM Match : Nodulin_late (HMM E-Value=0.25)
          Length = 472

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 310 CEHLIMPAHTPWLPKSIGAPALPHRMLAI 396
           CE L+M A TPW  KS  A     R+ A+
Sbjct: 13  CEILVMDARTPWSFKSARAALWKERVRAV 41


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,239,082
Number of Sequences: 59808
Number of extensions: 519081
Number of successful extensions: 1933
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1927
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -