Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30035X
(555 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23683| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.022
SB_30353| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.051
SB_35717| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10) 29 1.9
SB_23024| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_30415| Best HMM Match : M (HMM E-Value=6.5e-05) 29 3.4
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_54674| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_36254| Best HMM Match : Filament (HMM E-Value=0.21) 28 5.9
SB_11734| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_38304| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.39) 28 5.9
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 28 5.9
SB_16530| Best HMM Match : HALZ (HMM E-Value=6.5) 27 7.8
SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0) 27 7.8
>SB_23683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 35.9 bits (79), Expect = 0.022
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = -3
Query: 511 IESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKDV 371
++ LD+LN+ LD LE ND ++ +++E L+ RQ E D+
Sbjct: 33 LDDKLDQLNTCLDKLENWNDSLNSRMREFLEDMQKSRQSQTGEANDL 79
>SB_30353| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1553
Score = 34.7 bits (76), Expect = 0.051
Identities = 20/56 (35%), Positives = 32/56 (57%)
Frame = -3
Query: 529 NRRV*IIESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKDVSNS 362
N RV ++ES L+ N++L K D +QL+++ Q I QE+ +E KD N+
Sbjct: 804 NERVALVESKLNRTNTSLKDTSIKVSDYERQLEKVKQEKQEITQEL-QETKDELNT 858
>SB_35717| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 161
Score = 33.1 bits (72), Expect = 0.16
Identities = 22/81 (27%), Positives = 38/81 (46%)
Frame = +2
Query: 242 MVILN*QFLFYTFETNKLH*VTCIFAQLNLK*CCICISSITVADVLIFFTHFLSNCNIGL 421
+V LN ++ NK H V + QLN I + ++T+ +L F T + +C +
Sbjct: 65 IVTLNGLLRYFVARENKYHSVQPLSCQLNQCKLLIAVRTVTLYGLLPFCTSTIVDCRENI 124
Query: 422 QKLFQLLVNIIIFTLQEIQCR 484
L L++I T +QC+
Sbjct: 125 NSLLATLLDITRTT--TVQCQ 143
>SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10)
Length = 2478
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -3
Query: 508 ESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKDVS 368
E + EL L L ++ D+ H Q + + + +E+RE+ K S
Sbjct: 1022 ERQIKELQEILGTLRKELDEAHNQARSACANELVAMEELREQTKIAS 1068
>SB_23024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 593
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = -3
Query: 514 IIESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKDVSNSN*RNAN 344
I+ S ++ L + L+F + K D + LK Q ++ QE++ N+ + N N
Sbjct: 308 ILRSEVETLRAELEFNQHKTDQYEELLKSERQRIRSLEQELQSTNEKLHFQTETNMN 364
>SB_30415| Best HMM Match : M (HMM E-Value=6.5e-05)
Length = 1312
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = -3
Query: 499 LDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKDVSNSN*RNANTAL 335
+D L ++L+ ++RKN ++ LL+ I REE + S+ + NT L
Sbjct: 233 VDHLTTSLEEVQRKNRKYADEVDRLLKKIQNIEDSFREEKAVLIKSHESDKNTVL 287
>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3934
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/54 (29%), Positives = 31/54 (57%)
Frame = -3
Query: 496 DELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKDVSNSN*RNANTAL 335
D L + ++++D+I +++KE L+S ++ QE +EE + + N N T L
Sbjct: 2658 DHLTNFKQSCQKQSDEI-RRIKEDLKSKESLLQETKEELEALKEENSENKETIL 2710
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/52 (25%), Positives = 28/52 (53%)
Frame = -3
Query: 499 LDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKDVSNSN*RNAN 344
L++++ L L K DD+ ++ +E+ R+E+R+E ++ N+ N
Sbjct: 2810 LEKMDDNLTELRLKYDDLVKEREEVKSDLATTREELRQEQIELKNARKEGEN 2861
>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2520
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Frame = -3
Query: 511 IESTLDELNSALDFLERKNDDIHQQLKELL----QSNIAIRQEMREENK 377
++ T+DEL++++ + K I +QLK+ L + A+++E+ E+ K
Sbjct: 846 LKKTVDELSNSITLRDEKITKIKEQLKQTLEKFKEKEKALKEEIAEKEK 894
>SB_54674| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1149
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 466 ERKNDDIHQQLKELLQSNIAIRQEMREENKDVSN 365
ER D QQL +L Q ++ +REE ++ N
Sbjct: 505 ERMRQDYEQQLSDLKQEVFSLTARLREEEQNADN 538
>SB_36254| Best HMM Match : Filament (HMM E-Value=0.21)
Length = 589
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Frame = -3
Query: 505 STLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEM---REENKDVSNSN*RNAN 344
S D L + L+ K+DD+ ++ + L + A+++E+ RE+ DV N + +++N
Sbjct: 286 SAEDSLREEVGSLKSKSDDLEKEREMLQREKNALQRELRNVREKLMDVENVHKQSSN 342
>SB_11734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 445
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 52 FFFCEQCSTKCYFSFL 99
F F C+TKC+FSFL
Sbjct: 144 FVFLLSCATKCFFSFL 159
>SB_38304| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.39)
Length = 704
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = -3
Query: 487 NSALDFLERKNDDIHQQLKELLQSNIAIRQEMREE-NKDVSNS 362
NSAL L + + QL++ +Q+N A+R ++ E+ N+ +S+S
Sbjct: 479 NSALAMLLAEVRSLRVQLEKSIQTNNALRLKLEEQLNRPISHS 521
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Frame = -3
Query: 505 STLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEM---REENKDVSNSN*RNAN 344
S D L + L+ K+DD+ ++ + L + A+++E+ RE+ DV N + +++N
Sbjct: 2814 SAEDSLREEVGSLKSKSDDLEKEREMLQREKNALQRELRNVREKLMDVENVHKQSSN 2870
>SB_16530| Best HMM Match : HALZ (HMM E-Value=6.5)
Length = 75
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/54 (22%), Positives = 35/54 (64%)
Frame = -3
Query: 475 DFLERKNDDIHQQLKELLQSNIAIRQEMREENKDVSNSN*RNANTALF*I*LCK 314
D L ++++++ ++LK L++ + A+R++M +++ ++ + + NT+ + CK
Sbjct: 3 DRLRKEHEELKKELKMLIKEHEALREKMVDKSFAPTHDDVQTLNTSCDGLVACK 56
>SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0)
Length = 1997
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/45 (28%), Positives = 29/45 (64%)
Frame = -3
Query: 511 IESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENK 377
+ESTLDE+N L+ ++ ++ +++K L+ ++ + Q+ EE +
Sbjct: 1018 LESTLDEVNLNLEREKKVRGEV-EKVKRKLEGDLKMTQQTLEETQ 1061
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,881,507
Number of Sequences: 59808
Number of extensions: 253141
Number of successful extensions: 631
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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