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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30034
         (699 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37595| Best HMM Match : Ribosomal_S11 (HMM E-Value=0)              131   6e-31
SB_44699| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)        56   2e-08
SB_32312| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)        56   2e-08
SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40)        56   2e-08
SB_5679| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)         56   2e-08
SB_35727| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.1e-07)        56   2e-08
SB_6626| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)         56   2e-08
SB_41736| Best HMM Match : Ribosomal_L24e (HMM E-Value=3.2e-07)        54   1e-07
SB_49067| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.8e-07)        53   2e-07
SB_18434| Best HMM Match : DUF646 (HMM E-Value=4.8)                    30   1.6  
SB_15000| Best HMM Match : CRA_rpt (HMM E-Value=4)                     29   2.7  
SB_8656| Best HMM Match : Chorion_3 (HMM E-Value=2.4)                  29   2.7  
SB_36099| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_56400| Best HMM Match : MTS (HMM E-Value=0.44)                      29   4.8  
SB_46402| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_7970| Best HMM Match : RCC1 (HMM E-Value=0)                         28   8.4  

>SB_37595| Best HMM Match : Ribosomal_S11 (HMM E-Value=0)
          Length = 543

 Score =  131 bits (316), Expect = 6e-31
 Identities = 64/75 (85%), Positives = 69/75 (92%), Gaps = 1/75 (1%)
 Frame = -1

Query: 477 LGPQHL-VGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAM 301
           LG +H+  GE VFGVAHIFASFNDTFVHVTDLSGRETI+RVTGGMKVKADRDEASPYAAM
Sbjct: 187 LGWRHVGEGELVFGVAHIFASFNDTFVHVTDLSGRETISRVTGGMKVKADRDEASPYAAM 246

Query: 300 LAAQDVAEKCKTLGI 256
           LAAQDVA +CK +GI
Sbjct: 247 LAAQDVAARCKEIGI 261


>SB_44699| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
          Length = 113

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 24/31 (77%), Positives = 27/31 (87%)
 Frame = +2

Query: 551 KCEAAHLMRRNPRKVTWTVLYRRKFKKGQEE 643
           +CE A LMRRNPR+VTWTVLYRRK KKG +E
Sbjct: 15  RCERALLMRRNPREVTWTVLYRRKHKKGTQE 45


>SB_32312| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
          Length = 90

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 24/31 (77%), Positives = 27/31 (87%)
 Frame = +2

Query: 551 KCEAAHLMRRNPRKVTWTVLYRRKFKKGQEE 643
           +CE A LMRRNPR+VTWTVLYRRK KKG +E
Sbjct: 15  RCERALLMRRNPREVTWTVLYRRKHKKGTQE 45


>SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40)
          Length = 154

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 24/31 (77%), Positives = 27/31 (87%)
 Frame = +2

Query: 551 KCEAAHLMRRNPRKVTWTVLYRRKFKKGQEE 643
           +CE A LMRRNPR+VTWTVLYRRK KKG +E
Sbjct: 35  RCERALLMRRNPREVTWTVLYRRKHKKGTQE 65


>SB_5679| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
          Length = 90

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 24/31 (77%), Positives = 27/31 (87%)
 Frame = +2

Query: 551 KCEAAHLMRRNPRKVTWTVLYRRKFKKGQEE 643
           +CE A LMRRNPR+VTWTVLYRRK KKG +E
Sbjct: 15  RCERALLMRRNPREVTWTVLYRRKHKKGTQE 45


>SB_35727| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.1e-07)
          Length = 139

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 24/31 (77%), Positives = 27/31 (87%)
 Frame = +2

Query: 551 KCEAAHLMRRNPRKVTWTVLYRRKFKKGQEE 643
           +CE A LMRRNPR+VTWTVLYRRK KKG +E
Sbjct: 50  RCERALLMRRNPREVTWTVLYRRKHKKGTQE 80


>SB_6626| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
          Length = 90

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 24/31 (77%), Positives = 27/31 (87%)
 Frame = +2

Query: 551 KCEAAHLMRRNPRKVTWTVLYRRKFKKGQEE 643
           +CE A LMRRNPR+VTWTVLYRRK KKG +E
Sbjct: 15  RCERALLMRRNPREVTWTVLYRRKHKKGTQE 45


>SB_41736| Best HMM Match : Ribosomal_L24e (HMM E-Value=3.2e-07)
          Length = 104

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 23/31 (74%), Positives = 26/31 (83%)
 Frame = +2

Query: 551 KCEAAHLMRRNPRKVTWTVLYRRKFKKGQEE 643
           +CE A LMRRNPR+VTWTVLYRR  KKG +E
Sbjct: 15  RCERALLMRRNPREVTWTVLYRRMHKKGTQE 45


>SB_49067| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.8e-07)
          Length = 90

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 23/31 (74%), Positives = 26/31 (83%)
 Frame = +2

Query: 551 KCEAAHLMRRNPRKVTWTVLYRRKFKKGQEE 643
           +CE A LMRRNPR+VTWTVLYR K KKG +E
Sbjct: 15  RCERALLMRRNPREVTWTVLYRCKHKKGTQE 45


>SB_18434| Best HMM Match : DUF646 (HMM E-Value=4.8)
          Length = 178

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
 Frame = -1

Query: 510 NKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLS-GRETIARVTGGMKVKA 334
           NK+ K    +TLG   +  ET    AH  A  +    HVTD    RE  ++ +   KV A
Sbjct: 65  NKLQKATDTMTLGANAINTETKPVGAHNMAGGHARVQHVTDPGIDREVRSKASAPAKVHA 124

Query: 333 DRDEASPYAAMLAAQDV 283
           +    +P   M AA  V
Sbjct: 125 EGAAPAPSPRMHAAHSV 141


>SB_15000| Best HMM Match : CRA_rpt (HMM E-Value=4)
          Length = 433

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -1

Query: 510 NKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTD-LSGRETIARVTGGMKVKA 334
           NK+ K    +TLG   +  ET    AH  A  N    HVT+   GRE  ++     KV A
Sbjct: 329 NKLQKATDSMTLGANAISTETKPVGAHNMAGGNPRVQHVTNPRIGREVRSKAFAPAKVYA 388

Query: 333 DRDEASPYAAM 301
           +    +P + M
Sbjct: 389 EGAAPAPSSRM 399


>SB_8656| Best HMM Match : Chorion_3 (HMM E-Value=2.4)
          Length = 352

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
 Frame = -1

Query: 510 NKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLS-GRETIARVTGGMKVKA 334
           NK+ K    +TLG   +  ET    AH  A  +    HVTD    RE  ++ +   KV A
Sbjct: 239 NKLQKATDTMTLGANAINTETKPVGAHNMAGGHPRVQHVTDPGIDREVRSKASAPAKVHA 298

Query: 333 DRDEASPYAAMLAAQDV 283
           +    +P   M AA  +
Sbjct: 299 EGAAPAPSPRMHAAHSM 315


>SB_36099| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1105

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = +2

Query: 182  CRLSTRTRGLCFVSTSSTELYVQGLMPRVLHFSATSCAANIAA*GDASSRSAFTFMPPVT 361
            CR++ R   LC   + + E+  +G+M     F A    + +A     S ++   FM    
Sbjct: 1000 CRINARLVVLCCCHSGTGEIRAEGVMGLTRAFLAAGARSVLATLWQISDKATLYFMKRFY 1059

Query: 362  RAIVS 376
            R +VS
Sbjct: 1060 RHLVS 1064


>SB_56400| Best HMM Match : MTS (HMM E-Value=0.44)
          Length = 230

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = -1

Query: 438 VAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRD 325
           + +I  +FND    + DLSG+ETI  ++   K++ +RD
Sbjct: 154 IIYIEDTFNDLLRTLRDLSGKETIVLIS--CKIRYERD 189


>SB_46402| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 947

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
 Frame = -1

Query: 510 NKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTD-LSGRETIARVTGGMKVKA 334
           NK+ K    +TLG   +  ET    AH  A  +    HVTD    RE  ++     KV A
Sbjct: 349 NKLQKATDSMTLGANAINTETKPLGAHNMAGGHPRVQHVTDPRIDREVRSKAFAPAKVHA 408

Query: 333 DRDEASPYAAMLAAQDV 283
           +    +P + M AA  +
Sbjct: 409 EGAAPAPSSRMHAAHSM 425


>SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2209

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 21/74 (28%), Positives = 33/74 (44%)
 Frame = -1

Query: 510 NKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKAD 331
           NK+ K    +TLG   +  ET    AH  A  +    HVTD       ++ +   KV A+
Sbjct: 368 NKLQKATNSMTLGANAINTETKPVGAHNMAGGHPRVQHVTDRVPSRRQSKDSAPAKVHAE 427

Query: 330 RDEASPYAAMLAAQ 289
              A+P A  ++ +
Sbjct: 428 GAAAAPAAHSMSGE 441


>SB_7970| Best HMM Match : RCC1 (HMM E-Value=0)
          Length = 651

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = -1

Query: 534 RLSHGPEKNKVAKEEVQVTLGPQHLVGETVFGVAHIFA 421
           RL HG E++++  ++V+  +GP H+V  +  G AH  A
Sbjct: 471 RLGHGDEQDQLLPKKVEAFVGP-HVVAVSA-GAAHSLA 506


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,675,359
Number of Sequences: 59808
Number of extensions: 466193
Number of successful extensions: 1109
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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