Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30031
         (383 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0)               79   1e-15
SB_37591| Best HMM Match : Ribosomal_L44 (HMM E-Value=0.026)           42   2e-04
SB_47544| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_22849| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               28   2.3  
SB_17127| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.0  
SB_33332| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.0  
SB_52318| Best HMM Match : Pox_A32 (HMM E-Value=0.066)                 27   4.0  
SB_16078| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.0  
SB_11815| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.002)             27   4.0  
SB_3772| Best HMM Match : EGF (HMM E-Value=6.3e-06)                    27   4.0  
SB_30079| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.2  
SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037)                27   5.2  
SB_55326| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.2  
SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6)                      27   5.2  
SB_42699| Best HMM Match : SIR2 (HMM E-Value=1.6e-12)                  27   6.9  
SB_36033| Best HMM Match : ATP-synt_B (HMM E-Value=1)                  26   9.2  
SB_58454| Best HMM Match : 7tm_1 (HMM E-Value=4.6e-21)                 26   9.2  
SB_46125| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  

>SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0)
          Length = 113

 Score = 79.0 bits (186), Expect = 1e-15
 Identities = 39/85 (45%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
 Frame = +2

Query: 17  SKMVNVPKQRRTYXXXXXXXXXXXX--TQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIF 190
           S +VNVPKQR+T+              TQYK  K    AQG+RRYDRKQ G+GGQ+KP+F
Sbjct: 6   SPVVNVPKQRKTFCKGKKCRRHTLHKVTQYKTGKASLFAQGKRRYDRKQSGFGGQTKPVF 65

Query: 191 XXXXXXXXXIVLRLECADCKVNHRL 265
                    IVLR+EC  CK   ++
Sbjct: 66  HKKAKTTKKIVLRMECTQCKYRKQM 90



 Score = 54.4 bits (125), Expect = 3e-08
 Identities = 23/25 (92%), Positives = 24/25 (96%)
 Frame = +1

Query: 259 QVALKRCKHFELGGDKKRKGQMIQF 333
           Q+ LKRCKHFELGGDKKRKGQMIQF
Sbjct: 89  QMPLKRCKHFELGGDKKRKGQMIQF 113


>SB_37591| Best HMM Match : Ribosomal_L44 (HMM E-Value=0.026)
          Length = 39

 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +1

Query: 259 QVALKRCKHFELGGDKKRK 315
           Q+ LKRCKHFELGGDKKRK
Sbjct: 21  QMPLKRCKHFELGGDKKRK 39


>SB_47544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 585

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 121 VPFLGLFVLCYLVYFVAFTFFA 56
           VPF+ LF+  YL+Y V F  ++
Sbjct: 562 VPFVSLFIQLYLIYLVFFVIYS 583


>SB_22849| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 1359

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -1

Query: 164  NPAVYDHNVFYPGQRAFPWTFCTVLPCVLCGIYIFCSTSCA 42
            +P + DH VFYP     P TF   L  V   I ++ ST+ A
Sbjct: 1172 HPILNDHGVFYPKALPHPLTFEITLATV-SDIVVYSSTTPA 1211


>SB_17127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 293 SSKCLHLFNATCDSPCNQHTQDGAQF 216
           SSKCLH+ N   D P N  +   A+F
Sbjct: 38  SSKCLHVINEDIDIPSNLPSSMSAKF 63


>SB_33332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 445

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 121 VPFLGLFVLCYLVYFVAFTFFAVRPALFWYVHHF*VRSA 5
           V  +  F+L YL+YF+ FT   +      YV  F VR A
Sbjct: 281 VSLIFAFILPYLLYFIYFTAMTILKPKVSYVIDFTVRYA 319


>SB_52318| Best HMM Match : Pox_A32 (HMM E-Value=0.066)
          Length = 716

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 164 NPAVYDHNVFYPGQRAFPWTF-CTVLPCVLCGIYIFCSTSCA 42
           +P + DH VFYP     P TF  T+ P  +  I ++ ST+ A
Sbjct: 167 HPILNDHGVFYPKALPHPLTFEITLAP--VSDIVVYSSTTPA 206


>SB_16078| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 392

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 106 LFVLCYLVYFVAFTFFAVRPALF 38
           LFV+CY+ Y V F     +P++F
Sbjct: 274 LFVICYMPYQVIFLIVEYKPSVF 296


>SB_11815| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.002)
          Length = 1725

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 164  NPAVYDHNVFYPGQRAFPWTF-CTVLPCVLCGIYIFCSTSCA 42
            +P + DH VFYP     P TF  T+ P  +  I ++ ST+ A
Sbjct: 1243 HPILNDHGVFYPKALPHPLTFEITLAP--VSDIVVYSSTTQA 1282


>SB_3772| Best HMM Match : EGF (HMM E-Value=6.3e-06)
          Length = 519

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 326 IICPFLFLSPPSSKCLHLFNATCDSPCN 243
           ++C  L   PPSS+CL     + + PCN
Sbjct: 454 MMCVNLDDRPPSSQCLQALQTSEEKPCN 481


>SB_30079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 877

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 253 ESQVALKRCKHFELGGDKKR 312
           +S++A  RC H  LGGD +R
Sbjct: 495 QSRIASPRCAHRPLGGDSRR 514


>SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037)
          Length = 303

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 346 LEAFKIGSSVPFSSCHHQAQSACI 275
           +E + +G S+ +  C H   SACI
Sbjct: 261 MEEYAVGDSMKYLPCRHNFHSACI 284


>SB_55326| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1289

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 19/70 (27%), Positives = 32/70 (45%)
 Frame = +3

Query: 6    AERTQKW*TYQNSAGRTAKNVNATKYTR*HSTKSPRKGTLPRVEDVMIVNSRVTVVSPNP 185
            AE   +W T +    + +K + + K  R   T  P       + D+    +R+T VSP  
Sbjct: 1021 AESFHRWLTQRQFCAQYSKELASGKTNREWVTALPIV-----ISDINATKTRMTGVSPKD 1075

Query: 186  SSKRRQKPLR 215
            + K R+ PL+
Sbjct: 1076 AIKLRRVPLK 1085


>SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6)
          Length = 399

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -1

Query: 140 VFYPGQRAFPWTFCTVLPCVLCGIYIFCSTSCAVLV 33
           VFYP     P     V+ C+   + + C   C +LV
Sbjct: 105 VFYPPSNGLPVFTLLVMDCLCFTLLVMCYLCCTLLV 140


>SB_42699| Best HMM Match : SIR2 (HMM E-Value=1.6e-12)
          Length = 501

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 104 KSKERHAAQGRRRYDRKQQGY 166
           K K+RHA Q    YD+K Q Y
Sbjct: 471 KQKDRHARQLGINYDKKHQNY 491


>SB_36033| Best HMM Match : ATP-synt_B (HMM E-Value=1)
          Length = 550

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 92  LPCVLCGIYIFCSTSCAVLV 33
           LP ++CG  + C   CA+LV
Sbjct: 209 LPAIVCGTVVGCFALCALLV 228


>SB_58454| Best HMM Match : 7tm_1 (HMM E-Value=4.6e-21)
          Length = 322

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 112 LGLFVLCYLVYFVAFTFFAVRPALFW 35
           LG F +C+  +F+ FT    RP + +
Sbjct: 190 LGTFTICWCPFFILFTVTQYRPLVLF 215


>SB_46125| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1564

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +3

Query: 123 LPRVEDVMIVNSRVT--VVSPNPSSKRRQKPLRKLCSVLSVL 242
           + +VE++++ + +V   V +P+P+   R  P   LC +LS L
Sbjct: 382 ISKVEELLVASCKVPEKVNAPSPAQTLRSLPRVSLCYILSNL 423


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,684,794
Number of Sequences: 59808
Number of extensions: 252786
Number of successful extensions: 1021
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 656970245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)