Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30026X
(380 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46974| Best HMM Match : TPR_1 (HMM E-Value=1.5e-10) 29 1.7
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0) 27 3.9
SB_31911| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.9
SB_46121| Best HMM Match : Cornifin (HMM E-Value=0.47) 27 5.2
SB_39767| Best HMM Match : CBAH (HMM E-Value=0.86) 27 6.8
SB_3124| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_55188| Best HMM Match : DUF59 (HMM E-Value=4.1) 26 9.0
SB_52991| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_13630| Best HMM Match : RVP (HMM E-Value=0.27) 26 9.0
SB_47270| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_46586| Best HMM Match : F5_F8_type_C (HMM E-Value=2.7e-15) 26 9.0
SB_39518| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_27764| Best HMM Match : RVT_1 (HMM E-Value=3.99931e-42) 26 9.0
SB_24072| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
>SB_46974| Best HMM Match : TPR_1 (HMM E-Value=1.5e-10)
Length = 466
Score = 28.7 bits (61), Expect = 1.7
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 255 YIEQLNDYDAAEKIIEHLESTLEDADGVTPV 347
Y+E L DY++A KI + ES DAD + +
Sbjct: 430 YVEALKDYESALKIDPNNESLRADADRIRAI 460
>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
Length = 2442
Score = 27.5 bits (58), Expect = 3.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 261 EQLNDYDAAEKIIEHLESTLEDADGVTPVHGRFYK 365
E L D+D+ K+ E L +++ DGVT YK
Sbjct: 477 EGLTDWDSITKLDEELTNSVTQQDGVTDCDDGTYK 511
>SB_31911| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1312
Score = 27.5 bits (58), Expect = 3.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 124 EIIAHIVEQYVNKRDAVTFLEKVETKVKMND 216
+I H+ + RD V EK ETK+++ND
Sbjct: 1034 KISQHLKKNITLSRDEVVEDEKTETKIRLND 1064
>SB_46121| Best HMM Match : Cornifin (HMM E-Value=0.47)
Length = 239
Score = 27.1 bits (57), Expect = 5.2
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -1
Query: 296 YFLGCIIIIQLFNVICPCSTLHRASASSFILTFVSTFSRNVTASLLLTYCSTI 138
YFL + I L N C+T+ S+ + + ST + ++L YC+TI
Sbjct: 3 YFLATVPPIILTN---NCTTILTDYCSTILTDYCSTILTDYCTTILTDYCTTI 52
Score = 26.2 bits (55), Expect = 9.0
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -1
Query: 245 CSTLHRASASSFILTFVSTFSRNVTASLLLTYCSTI 138
CST+ S+ + + +T + ++L YCSTI
Sbjct: 25 CSTILTDYCSTILTDYCTTILTDYCTTILTDYCSTI 60
Score = 26.2 bits (55), Expect = 9.0
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -1
Query: 245 CSTLHRASASSFILTFVSTFSRNVTASLLLTYCSTI 138
CST+ S+ + + +T + ++L YCSTI
Sbjct: 73 CSTILTDYCSTILTDYCTTILTDYCTTILTDYCSTI 108
Score = 26.2 bits (55), Expect = 9.0
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -1
Query: 245 CSTLHRASASSFILTFVSTFSRNVTASLLLTYCSTI 138
CST+ S+ + + ST + ++L YC+TI
Sbjct: 105 CSTILTDYCSTILTDYCSTILTDYCTTILTDYCTTI 140
>SB_39767| Best HMM Match : CBAH (HMM E-Value=0.86)
Length = 1182
Score = 26.6 bits (56), Expect = 6.8
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Frame = +1
Query: 43 QRGDNLIQLYNNFLTTFE-SKINPLSLVEIIAHIVEQYVNKRDAVTFL------EKVETK 201
Q G + +LYN + +E ++ +P + + + +Y+ K+D + L E + T
Sbjct: 313 QGGRSFDELYNKEQSGYEDNEYDPENPDNCVDKVGFRYIRKQDVESALIDSAQKEGLSTN 372
Query: 202 VKMNDEALALCKVLQGQ 252
K+ND++L +QG+
Sbjct: 373 CKLNDKSLVEAVCVQGE 389
>SB_3124| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 26.6 bits (56), Expect = 6.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 59 SYSCTITF*PPSKAK*IPYHWLRSLLISW 145
S +C +T P AK +PYH L S++ +W
Sbjct: 26 SIACVVTIVPEKCAKDVPYH-LGSVMGTW 53
>SB_55188| Best HMM Match : DUF59 (HMM E-Value=4.1)
Length = 462
Score = 26.2 bits (55), Expect = 9.0
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 160 KRDAVTFLEKVETKVKMNDEALALCKVLQGQI 255
K D +TF++ V+ +++ D A + +QGQI
Sbjct: 185 KDDKLTFVKAVQLAIEIEDAAKVAKETVQGQI 216
>SB_52991| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 820
Score = 26.2 bits (55), Expect = 9.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 88 TFESKINPLSLVEIIAHIVEQYVNKRDAVTFLEKVETK 201
T E+ + P+SL +A I+E R L+K++ K
Sbjct: 258 TVENDVRPISLTSQVAKIIEGLTLSRMLPAVLDKIDGK 295
>SB_13630| Best HMM Match : RVP (HMM E-Value=0.27)
Length = 373
Score = 26.2 bits (55), Expect = 9.0
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 160 KRDAVTFLEKVETKVKMNDEALALCKVLQGQI 255
K D +TF++ V+ +++ D A + +QGQI
Sbjct: 167 KDDKLTFVKAVQLAIEIEDAAKVAKETVQGQI 198
>SB_47270| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 288
Score = 26.2 bits (55), Expect = 9.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 245 CSTLHRASASSFILTFVSTFSRNVTASLLLTYCS 144
C+T ++ SS+I + SRNV L +T C+
Sbjct: 204 CTTRRQSGMSSYIFSLNCYTSRNVCCKLWVTGCA 237
>SB_46586| Best HMM Match : F5_F8_type_C (HMM E-Value=2.7e-15)
Length = 311
Score = 26.2 bits (55), Expect = 9.0
Identities = 17/76 (22%), Positives = 33/76 (43%)
Frame = -1
Query: 260 NVICPCSTLHRASASSFILTFVSTFSRNVTASLLLTYCSTI*AMISTNDRGFILLSKVVK 81
+++C +T + A ++L+F TFS + + + DR I+ S +
Sbjct: 204 HIVCGLATQGNSVADQWVLSFKLTFSPDGSVYKDYKENGETREFVGNLDRDSIVQSTIYA 263
Query: 80 KLLYNCMRLSPLCRAG 33
K + +R+ PL G
Sbjct: 264 KPIARVIRIVPLNHVG 279
>SB_39518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 26.2 bits (55), Expect = 9.0
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 34 PALQRGDNLIQLYNNFLTTFESKINPLSLVEIIAHIVEQYVNKR 165
PAL + N+ ++ T P+SL+ I++ ++E+ V KR
Sbjct: 77 PALWKDANVTPVFKKDDPTLAENYRPISLLCILSKVLERCVFKR 120
>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 26.2 bits (55), Expect = 9.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 366 TYKIVRELESHHQHLRVYFLNVQLFSRLHHNHSAV 262
T+K++ + +H Q Y + QL R HH H V
Sbjct: 396 THKLLIVITTHPQVTHRYHQHPQLTHRYHHQHPQV 430
>SB_27764| Best HMM Match : RVT_1 (HMM E-Value=3.99931e-42)
Length = 715
Score = 26.2 bits (55), Expect = 9.0
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 34 PALQRGDNLIQLYNNFLTTFESKINPLSLVEIIAHIVEQYVNKR 165
PAL + N+ ++ T P+SL+ I++ ++E+ V KR
Sbjct: 474 PALWKDANVTPVFKKDDPTLAENYRPISLLCILSKVLERCVFKR 517
>SB_24072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 822
Score = 26.2 bits (55), Expect = 9.0
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 34 PALQRGDNLIQLYNNFLTTFESKINPLSLVEIIAHIVEQYVNKR 165
PAL + N+ ++ T P+SL+ I++ ++E+ V KR
Sbjct: 468 PALWKDANVTPVFKKDDPTLAENYRPISLLCILSKVLERCVFKR 511
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,492,825
Number of Sequences: 59808
Number of extensions: 220339
Number of successful extensions: 650
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 644574580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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