Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30022
         (759 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10800| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   5e-06
SB_17864| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_25021| Best HMM Match : TP2 (HMM E-Value=2.8)                       28   9.5  
SB_645| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   9.5  

>SB_10800| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 943

 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
 Frame = +3

Query: 6   LDGK--GPE-VIDDWPLHPAHGVNTTLVVGACWQGTEKDMKHHLRGWLAGLGVLRGAAQP 176
           +DG+  GP   I ++ LH A    +  VVGA W+G +K  + H RG+L+G+ V       
Sbjct: 504 IDGQHVGPHRTIPNFRLH-ASNTKSHAVVGAVWKGKDKKYEKHFRGFLSGMTVRPNKLTS 562

Query: 177 SHALSCLARCREGLSLAPDL 236
              + CL  CRE +++   L
Sbjct: 563 KQTIRCLMGCREHINIGTSL 582


>SB_17864| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 911

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +1

Query: 184 RSPVWLAAGRDSVWHRTYVTTHXSSIHCRLKHSKTYEH 297
           R+PVW     D  +HR  +T   S IH +     T  H
Sbjct: 68  RTPVW-GRWTDGTYHRGTITNVDSKIHIKFNDGDTISH 104


>SB_25021| Best HMM Match : TP2 (HMM E-Value=2.8)
          Length = 643

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 153 VLRGAAQPSHALSCLARCREGLSLAPDLCNYSQXINTLSLKAFKD 287
           V+    QP    +      EG +L PDLC+ +   N+L L   KD
Sbjct: 291 VMTPHGQPGQDFALYVTFNEGQNLDPDLCDINVAENSLVLTLQKD 335


>SB_645| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 684

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 217 SPSRQRARQESACEGCAAPRSTPSPASQPRR 125
           SP R+R+R  S      A RS+PSP  +  R
Sbjct: 142 SPGRRRSRSRSPARRRTAARSSPSPPKRQGR 172


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,116,494
Number of Sequences: 59808
Number of extensions: 456491
Number of successful extensions: 1114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)