Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30019
         (576 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37595| Best HMM Match : Ribosomal_S11 (HMM E-Value=0)               95   5e-20
SB_56400| Best HMM Match : MTS (HMM E-Value=0.44)                      29   3.6  
SB_15000| Best HMM Match : CRA_rpt (HMM E-Value=4)                     27   8.3  

>SB_37595| Best HMM Match : Ribosomal_S11 (HMM E-Value=0)
          Length = 543

 Score = 94.7 bits (225), Expect = 5e-20
 Identities = 46/56 (82%), Positives = 50/56 (89%), Gaps = 1/56 (1%)
 Frame = +3

Query: 102 LGPQHL-VGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDKRHP 266
           LG +H+  GE VFGVAHIFASFNDTFVHVTDLSGRETI+RVTGGMKVKADRD+  P
Sbjct: 187 LGWRHVGEGELVFGVAHIFASFNDTFVHVTDLSGRETISRVTGGMKVKADRDEASP 242



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 25/51 (49%), Positives = 27/51 (52%)
 Frame = +2

Query: 287 QDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRI 439
           QDVA +CK +GITALHIKLRA            AQ          MKIGRI
Sbjct: 250 QDVAARCKEIGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRI 300


>SB_56400| Best HMM Match : MTS (HMM E-Value=0.44)
          Length = 230

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +3

Query: 141 VAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRD 254
           + +I  +FND    + DLSG+ETI  ++   K++ +RD
Sbjct: 154 IIYIEDTFNDLLRTLRDLSGKETIVLIS--CKIRYERD 189


>SB_15000| Best HMM Match : CRA_rpt (HMM E-Value=4)
          Length = 433

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +3

Query: 69  NKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTD-LSGRETIARVTGGMKVKA 245
           NK+ K    +TLG   +  ET    AH  A  N    HVT+   GRE  ++     KV A
Sbjct: 329 NKLQKATDSMTLGANAISTETKPVGAHNMAGGNPRVQHVTNPRIGREVRSKAFAPAKVYA 388

Query: 246 D 248
           +
Sbjct: 389 E 389


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,311,491
Number of Sequences: 59808
Number of extensions: 363454
Number of successful extensions: 896
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)