Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30010X
(566 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 8e-11
SB_30565| Best HMM Match : Metallothio (HMM E-Value=1.8) 33 0.16
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_47507| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13) 29 3.5
SB_58665| Best HMM Match : TSP_1 (HMM E-Value=7.5e-10) 29 3.5
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26) 29 3.5
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25) 29 3.5
SB_57351| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_28756| Best HMM Match : C1_4 (HMM E-Value=0.095) 28 4.6
SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_51925| Best HMM Match : DIX (HMM E-Value=0.75) 27 8.1
SB_36437| Best HMM Match : Helicase_C (HMM E-Value=2e-13) 27 8.1
SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46) 27 8.1
>SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 744
Score = 64.1 bits (149), Expect = 8e-11
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +3
Query: 312 FGSLIIGYSRNPSLKQQLFSYAILGFALSEA 404
FGSLIIGY+RNPSLKQQLFSYAILGFALSEA
Sbjct: 126 FGSLIIGYARNPSLKQQLFSYAILGFALSEA 156
Score = 33.9 bits (74), Expect = 0.093
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +1
Query: 118 SALVRPLAAVPTHTQMVPAVPTQLS-AVRSFQTTSVTKDIDSAAKFM 255
+A +RP + +VPA P + A R FQT+S +D+DSAAKF+
Sbjct: 61 TAAIRPQSQALVKA-VVPASPLLGALASRGFQTSSAVQDVDSAAKFI 106
>SB_30565| Best HMM Match : Metallothio (HMM E-Value=1.8)
Length = 565
Score = 33.1 bits (72), Expect = 0.16
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -3
Query: 264 HQHHEFGSRVNVLSDRCGLEGPHCR-ELCRDSRYHLCMGG 148
H+ E R NVLSD GLE CR LC + + C G
Sbjct: 72 HRQPEASQRCNVLSDAPGLETESCRCTLCDERGFSACRSG 111
>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5834
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 213 GLEGPHCRELCRDSRYHLCMG-GYCCKWSHQC 121
G G C +LC+ +++C G G C +W+ C
Sbjct: 5392 GYWGEDCGKLCKGGIWNVCNGHGTCNRWTGDC 5423
>SB_47507| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 917
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -3
Query: 213 GLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDGR-PGCRGDQSGGRQ 64
G + P E CR + C C +++HQC E+G P S GR+
Sbjct: 365 GRDRPTSSEACRSWNFAKCFFPGC-RYTHQCAYCENGNYPARECPSSAGRK 414
>SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13)
Length = 186
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 122 HWCDHLQQYPPIHRWY-LLSLHSSLQCGPSRPHRSLRTL 235
HW + + PI RW+ L H+SL P+RP+R+ + +
Sbjct: 129 HWNEAMTAKKPIARWHSLREFHNSLL--PTRPNRTSKPI 165
>SB_58665| Best HMM Match : TSP_1 (HMM E-Value=7.5e-10)
Length = 718
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +3
Query: 54 KQNAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYTALCSAVLPD 212
++ VC TD+PC + H ++ C T +T P T C T S +PD
Sbjct: 489 RRERVCSDTDKPCQGLDHEVRECQ-VTRPDTTTPTMPTTLC--TIHYSQXVPD 538
>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
Length = 351
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 135 TCSSTHPYTDGTCCPYTALCSAV 203
+CSS H DGTC ++ C+ V
Sbjct: 111 SCSSRHACADGTCVTWSLTCNGV 133
>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
Length = 147
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 135 TCSSTHPYTDGTCCPYTALCSAV 203
+CSS H DGTC ++ C+ V
Sbjct: 111 SCSSRHACADGTCVTWSLTCNGV 133
>SB_57351| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 559
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -1
Query: 344 VPGIADDEGAEDCSNTSSGTSYSHCRCTSTMNLAAESMSLVTD 216
+P DD + ++TSS T +HC + T A+ S +T+
Sbjct: 30 IPFDPDDGESIPMTSTSSRTHAAHCMASQTAGTASAETSFITE 72
>SB_28756| Best HMM Match : C1_4 (HMM E-Value=0.095)
Length = 201
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -3
Query: 192 RELCRDSRYHLCMGGYCCKWSHQCR 118
R CR HLC+G C+W Q R
Sbjct: 173 RNGCRKCDVHLCVGDCFCEWHQQRR 197
>SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1646
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +1
Query: 289 PELVLEQSSAP--SSSAIPGTPPSNSSCS 369
P +QS+ P SSSA PGTPP N+ S
Sbjct: 1038 PSPGFQQSTLPPQSSSAQPGTPPQNAKNS 1066
>SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1315
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Frame = -3
Query: 195 CRELCRDSRYHLCMGGYCCKWSHQC---RVAEDG--RPGCRGDQSG 73
C C Y C+ G C KW C + EDG PG G Q G
Sbjct: 1189 CDHKCSKDEYQ-CVSGACVKWPLTCDGKKDCEDGTDEPGICGVQIG 1233
>SB_51925| Best HMM Match : DIX (HMM E-Value=0.75)
Length = 256
Score = 27.5 bits (58), Expect = 8.1
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = +1
Query: 208 QTTSVTKDIDSAAKFMVLVQRQWE*LVPELVLEQSSAPSSSAIPGTPPSNSSCSHTPFWV 387
+ T V D+ A + V+ + +V + E SA S+A TP S TP V
Sbjct: 138 EVTLVMNAEDTPANVAMDVEENQQEVVRKKAEESESASESTATEATPSEVSPIETTPSEV 197
Query: 388 SP 393
SP
Sbjct: 198 SP 199
>SB_36437| Best HMM Match : Helicase_C (HMM E-Value=2e-13)
Length = 479
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 109 FCNSALVRPLAAVPTHTQMVPAVPTQLSAVRSF 207
+CN+ L R +VP T +VP T L V S+
Sbjct: 441 YCNNGLKRDGVSVPAFTTLVPEPRTSLYLVASW 473
>SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)
Length = 572
Score = 27.5 bits (58), Expect = 8.1
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +1
Query: 115 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTKDIDSAAKFMVLVQRQWE-*LVP 291
NS ++ PL +VP +T ++PA P S + + S ++ + + L + L+P
Sbjct: 79 NSTMILPLTSVPYNTTLIPA-PNATSTAATTMSPSYVANMTTLDSSVSLTRSSLSTTLIP 137
Query: 292 ELVLEQSSAPSSSAIPGTP 348
+ S P ++ + TP
Sbjct: 138 S--ISTSILPYNTTVIATP 154
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,990,033
Number of Sequences: 59808
Number of extensions: 372407
Number of successful extensions: 1377
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1370
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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