Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10407
         (711 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)         128   6e-30
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_57007| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)
          Length = 147

 Score =  128 bits (308), Expect = 6e-30
 Identities = 56/85 (65%), Positives = 72/85 (84%)
 Frame = +2

Query: 254 QANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSEL 433
           +A +DVKTTDGY+LR+FCIGFT +     +KT YA+HTQ++AIRKKM +IITR+V+ ++L
Sbjct: 5   EAAVDVKTTDGYLLRMFCIGFTKRRQNQIKKTAYAKHTQIKAIRKKMVDIITREVSTNDL 64

Query: 434 REVVNKLIPDSIAKDIEKACHGIYP 508
           +EVVNKLIPDSI KDIEK+C  IYP
Sbjct: 65  KEVVNKLIPDSIGKDIEKSCQSIYP 89



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 29/60 (48%), Positives = 38/60 (63%), Gaps = 5/60 (8%)
 Frame = +1

Query: 505 PLRDVCIRKVKVLKRPRFEISKLMELH-----XXXXXXXXXXXDKSERPEGYEPPVQESV 669
           PL DV IRKVKVLK+P+F+I KLME+H                 K +R EG+EPP+Q++V
Sbjct: 89  PLHDVHIRKVKVLKKPKFDIGKLMEMHGEASSHATTTTTDETGTKIDR-EGFEPPIQDTV 147


>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1974

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +3

Query: 78   VFEVSLADLQADTDAERSFRKFRLIAEYVQ 167
            +F  + +D+QA+++    FR+F L+ EYV+
Sbjct: 1176 IFNNTFSDVQANSNQIWKFRRFELVMEYVE 1205


>SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 139 LRKDLSASVSACRSARETSKTLPFNPSEAIFV 44
           LRK L    S  +  RE  + L FNP E+ +V
Sbjct: 302 LRKQLIDMASVAKDLREIDELLKFNPDESAYV 333


>SB_57007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 666

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 6/81 (7%)
 Frame = -3

Query: 316 ETNAEDT*NVSIGCLHINVGLMRVCHFLTIHLSLSVVRSMP-WKL-----QSTLRPCTYS 155
           E+    T  + + C  ++  L  V  FL ++L  +V R +  W L      ST  P  Y 
Sbjct: 509 ESKITHTLLIVVVCFMVSWALFAVTIFLNVYLPGTVPRRVNMWSLILGYVNSTCNPAIYG 568

Query: 154 AINLNLRKDLSASVSACRSAR 92
             N  +RK        CR  R
Sbjct: 569 IRNAKIRKGFRDMYVKCRFRR 589


>SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1805

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
 Frame = -2

Query: 293 ERIHRLSSHQCWL---DESLPFFNHPPELI 213
           E++ +L +H  ++   +E LPF NHPP +I
Sbjct: 492 EKLQQLFNHTMFILEQEECLPFCNHPPMVI 521


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,639,144
Number of Sequences: 59808
Number of extensions: 459463
Number of successful extensions: 1380
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1377
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)