Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10401
(768 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 184 7e-47
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 107 1e-23
SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33) 59 3e-09
SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15) 50 2e-06
SB_19451| Best HMM Match : EFG_C (HMM E-Value=1.8e-13) 35 0.083
SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.59
SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0) 30 2.4
SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32) 29 5.5
SB_30916| Best HMM Match : C2 (HMM E-Value=1.2e-17) 28 7.2
SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_12373| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_1152| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4) 28 9.5
SB_19996| Best HMM Match : PKD_channel (HMM E-Value=0) 28 9.5
SB_11283| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 184 bits (448), Expect = 7e-47
Identities = 99/172 (57%), Positives = 112/172 (65%), Gaps = 3/172 (1%)
Frame = +2
Query: 254 IKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLL 433
IKDSVVAGFQWA KEG + +EN+RGVRFNI+DVTLH DAIHRGGGQIIPT RR LYAC+L
Sbjct: 650 IKDSVVAGFQWATKEGPLCDENVRGVRFNIHDVTLHADAIHRGGGQIIPTARRVLYACML 709
Query: 434 TAQPRLMEPVYLCEIQCPEVAVGGITVC*T---DVVVTFSKSPRWQVHLCSL*RPTYLSM 604
TA+P L+EPVY EIQCPE AVGGI V+ S + + P S
Sbjct: 710 TAKPCLLEPVYSVEIQCPESAVGGIYGVLNRRRGQVLEESNVAGTPMFIVKAYLPVMESF 769
Query: 605 SRSVLLPICVPTPADKAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKG 760
+ L +AFPQCVFDHWQVLPGD + S P VV TRKRKG
Sbjct: 770 GFTADLR---SKTGGQAFPQCVFDHWQVLPGDVHDLASMPGQVVANTRKRKG 818
Score = 146 bits (354), Expect = 2e-35
Identities = 69/106 (65%), Positives = 79/106 (74%), Gaps = 6/106 (5%)
Frame = +3
Query: 3 CLSKSPNKHNRLFMKAQPMPDGLPEDIDEG-RVNPRDDFKTRARYLTEKYEYDVTEARKI 179
CLSKSPNKHNRLFM A P+ + LPEDID+G +NPR DFK RARYL + Y +DV EARKI
Sbjct: 565 CLSKSPNKHNRLFMTAGPLEEKLPEDIDDGCEINPRQDFKIRARYLADTYGWDVNEARKI 624
Query: 180 WCFGPEGTGPNILVDCSKGVQYLNELRTLL-----WLDSSGPLRKE 302
W FGPEGTGPN+LVD SKGVQYLNE++ + W GPL E
Sbjct: 625 WSFGPEGTGPNLLVDVSKGVQYLNEIKDSVVAGFQWATKEGPLCDE 670
Score = 93.5 bits (222), Expect = 2e-19
Identities = 44/54 (81%), Positives = 45/54 (83%)
Frame = +1
Query: 499 GWYHGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQGLP 660
G +GVLNRRRG V EES VAGTPMFIVKAYLPV ESFGFTADLRS TGGQ P
Sbjct: 732 GGIYGVLNRRRGQVLEESNVAGTPMFIVKAYLPVMESFGFTADLRSKTGGQAFP 785
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 107 bits (256), Expect = 1e-23
Identities = 59/154 (38%), Positives = 83/154 (53%), Gaps = 2/154 (1%)
Frame = +2
Query: 254 IKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLL 433
+KDS++ GFQWA +EG + +E +R V+F I D + + IHRGGGQIIPT RR Y+ L
Sbjct: 630 VKDSIIQGFQWATREGPLCDEPIRNVKFKILDAVIAGEPIHRGGGQIIPTARRVAYSAFL 689
Query: 434 TAQPRLMEPVYLCEIQCPEVAVGGI-TVC*TDVVVTFSKSPRWQVHLCSL*RPTYLSMSR 610
A PRLMEP + E+Q P V + TV +P L ++ ++
Sbjct: 690 MATPRLMEPYFFVEVQAPADCVSSVYTVLARRRGHVTQDAPVPGSPLYTI--KAFIPAID 747
Query: 611 SVLLPICVPTPAD-KAFPQCVFDHWQVLPGDPCE 709
S + T +AF VF HWQ++PGDP +
Sbjct: 748 SFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPLD 781
Score = 77.4 bits (182), Expect = 1e-14
Identities = 34/74 (45%), Positives = 48/74 (64%)
Frame = +3
Query: 3 CLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIW 182
C +++PNK N++ M A+P+ GL EDI+ +V + K + KY++D+ AR IW
Sbjct: 542 CFAETPNKKNKVTMIAEPLEKGLAEDIENEKVLISWNKKKLGEFFQTKYDWDLLAARSIW 601
Query: 183 CFGPEGTGPNILVD 224
FGPE TGPNILVD
Sbjct: 602 AFGPENTGPNILVD 615
Score = 59.3 bits (137), Expect = 3e-09
Identities = 24/46 (52%), Positives = 36/46 (78%)
Frame = +1
Query: 514 VLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQ 651
VL RRRGHV +++ V G+P++ +KA++P +SFGF DLR++T GQ
Sbjct: 717 VLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQ 762
>SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33)
Length = 119
Score = 59.3 bits (137), Expect = 3e-09
Identities = 24/46 (52%), Positives = 36/46 (78%)
Frame = +1
Query: 514 VLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQ 651
VL RRRGHV +++ V G+P++ +KA++P +SFGF DLR++T GQ
Sbjct: 27 VLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQ 72
Score = 35.1 bits (77), Expect = 0.063
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Frame = +2
Query: 437 AQPRLMEPVYLCEIQCPEVAVGGI-TVC*TDVVVTFSKSPRWQVHLCSL*RPTYLSMSRS 613
A PRLMEP + E+Q P V + TV +P L ++ ++ S
Sbjct: 1 ATPRLMEPYFFVEVQAPADCVSSVYTVLARRRGHVTQDAPVPGSPLYTI--KAFIPAIDS 58
Query: 614 VLLPICVPTPAD-KAFPQCVFDHWQVLPGDPCE 709
+ T +AF VF HWQ++PGDP +
Sbjct: 59 FGFETDLRTHTQGQAFCLSVFHHWQIVPGDPLD 91
>SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)
Length = 549
Score = 50.4 bits (115), Expect = 2e-06
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Frame = +1
Query: 499 GWYHGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQGLPAVRIRP 678
G + V+ RR G V E G+ +F V+A LPV ESFGF+ ++R T G P +
Sbjct: 428 GRMYAVIARREGRVLSEEMKEGSDVFDVEAVLPVAESFGFSEEIRKRTSGLANPQLMFSH 487
Query: 679 LAG----PPWRPVRTSEQALQRCTGNEKEERLRK 768
P W P T E+ + + E R RK
Sbjct: 488 WEAIDLDPYWVP-STEEEYMHFGEKADSENRARK 520
Score = 34.3 bits (75), Expect = 0.11
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +3
Query: 168 ARKIWCFGPEGTGPNILVD 224
A IW FGP GTGPNIL++
Sbjct: 179 ADHIWAFGPRGTGPNILLN 197
>SB_19451| Best HMM Match : EFG_C (HMM E-Value=1.8e-13)
Length = 238
Score = 34.7 bits (76), Expect = 0.083
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = +1
Query: 517 LNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQG 654
+NRR G V G F + A +P+N+ FG+ +LRS T G+G
Sbjct: 161 VNRRHGQVTGTDANEG--YFTLFAEVPLNDMFGYATELRSQTQGKG 204
>SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1117
Score = 31.9 bits (69), Expect = 0.59
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 335 FNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYL 469
FN V L + R +I+PT RR + LLT+ +PVY+
Sbjct: 526 FNKLGVFLGLAEVRRSLQEIVPTQRRKAFVALLTSTVNAKQPVYI 570
>SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0)
Length = 808
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +2
Query: 638 TPADKAFPQCVFDHWQVLPGDPCEPQS-KPYNVVQETRK 751
T A+ P+ +LP PCEP S KPY E R+
Sbjct: 49 TQAEPCTPEPTSSENVILPASPCEPDSPKPYTPESEGRE 87
>SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32)
Length = 648
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 18 PNKHNRLFMKAQPMPDGLPEDIDEGRVNPRD 110
PN N F+KA P+ DG D + G + RD
Sbjct: 413 PNTGNTEFVKAIPIEDGESHDSNYGTIESRD 443
>SB_30916| Best HMM Match : C2 (HMM E-Value=1.2e-17)
Length = 809
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +3
Query: 6 LSKSPNKHN--RLFMKAQPMPDGLPEDIDEGRVNPRD 110
L K N H+ LF K + +P L ED++EG V D
Sbjct: 243 LLKRLNLHHLMSLFCKTKKLPVALSEDLEEGEVTEED 279
>SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 103 PAMTSRLALGILQKSTNTMLPKPVRFGALAPRVPA 207
PA + GI++ ST ++P P+R + P VPA
Sbjct: 1109 PAKFVFTSTGIVRASTRKVVPSPLRRSKVPPTVPA 1143
>SB_12373| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -1
Query: 438 AVSRHAYKHLLVVGMIWPPPLWMA 367
A+ +H HL + +WP WMA
Sbjct: 13 ALRKHQCSHLFTIKRVWPVTRWMA 36
>SB_1152| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4)
Length = 216
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 225 CSKGVQYLNELRTLLWLDSSGPLRKELW 308
C+K + + NE L ++ S P++KE+W
Sbjct: 2 CNKMLSHWNEREHWLGVEQSWPIKKEMW 29
>SB_19996| Best HMM Match : PKD_channel (HMM E-Value=0)
Length = 746
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 4/22 (18%)
Frame = +3
Query: 54 PMPDGLPEDIDEGR----VNPR 107
P+PDG+ E+IDEG+ +NPR
Sbjct: 721 PVPDGIYEEIDEGQIYDIINPR 742
>SB_11283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 631
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -3
Query: 556 PGTLRKRDHDVCSAH-RDTTHSYFRTLNFTKIYRLHETGL 440
PG R R+ D H DT YF + + YR+ E G+
Sbjct: 446 PGIQRARNIDKLGMHCSDTAEFYFENVRVPQSYRIGEEGM 485
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,989,925
Number of Sequences: 59808
Number of extensions: 675011
Number of successful extensions: 1867
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1863
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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