Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10389
         (797 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)            33   0.27 
SB_10900| Best HMM Match : I-set (HMM E-Value=0)                       31   0.82 
SB_32264| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_5745| Best HMM Match : Extensin_2 (HMM E-Value=0.43)                29   5.8  
SB_34339| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)
          Length = 797

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -1

Query: 356 SPQTSTAAYRPPPSLATKTNPDVHCGTR-PLPSLAQRPVLHCLHTADP 216
           SP+T   AY P  +L   T P VH   R PLP+     V H   T  P
Sbjct: 627 SPRTPLPAYSPRTTLPANTTPRVHHSPRTPLPAYTSPRVRHSPRTPVP 674



 Score = 28.3 bits (60), Expect = 7.6
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = -1

Query: 356 SPQTSTAAYRPPPSLATKTNPDVHCGTR-PLPSLAQRPVLHCLHTADP 216
           SP+T   AY  P  L   T P VH   R P+P+     V H   T  P
Sbjct: 522 SPRTPVPAYFTPRVLPAYTTPRVHHSPRTPVPAYTTPRVHHSPRTPLP 569


>SB_10900| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1642

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 1/105 (0%)
 Frame = -1

Query: 497 PSYA*IFETGETNHPIDTTRTTVSSQKLRKIKMVRNKSXXXXXXXXISPQTSTAAYRPPP 318
           PSY  I +           + ++SS  +  +K               +  TSTAA     
Sbjct: 56  PSYYWIKDGTNVTKGTQDVKNSISSLTISGLKFTDAGQYVCVATGIATLTTSTAA----- 110

Query: 317 SLATKTNPDVHCG-TRPLPSLAQRPVLHCLHTADPREPQ*IVGPF 186
           +L  + +PD+  G T   P + Q  + HC+ TA+P        PF
Sbjct: 111 TLTVQGSPDITQGPTGTSPHVGQEAIFHCIATANPSPSVSWTNPF 155


>SB_32264| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 305

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 25/88 (28%), Positives = 34/88 (38%)
 Frame = +2

Query: 74  GDLSTLRLSVRGRQSRTFWPQRLSVPRAMCPAHCHFNEMDRRSIEVRGDPLYADSAGPVF 253
           GD++ +R+ V G      +P+R+ V   M P H       R S    G  L  +   P  
Sbjct: 68  GDITVVRIPVNGHDEHFSYPRRVPV---MYPMHYRGASHSRGSASPTGYRLEDNELAPDA 124

Query: 254 GRGWVEAVCRSGHLDWSLWRGLEEAYKP 337
            R   E  C      WS  R   +AY P
Sbjct: 125 RRKIYEGGC------WSESRQARKAYSP 146


>SB_5745| Best HMM Match : Extensin_2 (HMM E-Value=0.43)
          Length = 607

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = -1

Query: 353 PQTSTAAY-RPPPSLATKTNPDVHCG--TRPLPSLA--QRPVLHCLHTADPR 213
           PQ ++AA+ +P P LA  T P  H    T+P P  A   +P  H   T  P+
Sbjct: 50  PQPNSAAHTQPQPHLAATTQPQPHSAATTQPQPHSAATTKPQPHSAATTKPQ 101


>SB_34339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 615

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -3

Query: 324 SSKPRHKDQSRCPLRHTASTQPRPKTGPALSA-YSGSPRTSIDRRSISLKW 175
           S +PRH        R TAST+ RP +GP +S  + GS   S D  +    W
Sbjct: 175 SRQPRHGTTG--DKRRTASTRKRP-SGPGMSGDFGGSDDESEDEETNRFPW 222


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -3

Query: 324  SSKPRHKDQSRCPLRHTASTQPRPKTGPALSAYSGSPRTSIDRRS 190
            S+K   +  S  P R T S++ RP+  P   +    P +S  RRS
Sbjct: 1022 SAKKERQSHSESPQRVTKSSKERPRKRPRHQSRERRPSSSPPRRS 1066


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,524,521
Number of Sequences: 59808
Number of extensions: 577471
Number of successful extensions: 1758
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1755
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)