Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30102
         (713 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)              163   1e-40
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)                   37   0.019
SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)                      29   3.7  
SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14)                 29   4.9  
SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)                      29   4.9  
SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)                     29   4.9  
SB_29770| Best HMM Match : ig (HMM E-Value=3.4e-05)                    28   6.5  

>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
          Length = 212

 Score =  163 bits (396), Expect = 1e-40
 Identities = 96/193 (49%), Positives = 124/193 (64%), Gaps = 11/193 (5%)
 Frame = +2

Query: 149 MEGLCTSCRWRQRQARIP---DETGRPDKQPCSSSD------VKGHSCYRPRRDGERKRK 301
           + G C    W+    RI    D+ G P KQ   ++        KGHSCYRPRR GERKRK
Sbjct: 3   VSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKRK 62

Query: 302 SVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRR 481
           SVRGCIVD+ LSVL+LVIV+KG Q+IPGLTD  +PRRLGPKR  KIRK+FNLSKEDDVR+
Sbjct: 63  SVRGCIVDSQLSVLSLVIVKKGEQDIPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVRQ 122

Query: 482 YVVKRVLPARKEKKMLN--PDIRHLRSRG*SPL*FCSVDVIVSL*RRSVFAKRKFSEAEY 655
           YV++R LP ++ KK  +  P I+ L     +P+        ++L +R    K K   A+Y
Sbjct: 123 YVIRRPLPEKEGKKAKSKAPKIQRLV----TPVVLQRKRKRLAL-KRQRAQKCKQEAADY 177

Query: 656 AKLLAQRKRKESQ 694
           AKLLA+R ++  +
Sbjct: 178 AKLLAKRAKEAKE 190



 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 34/45 (75%), Positives = 39/45 (86%)
 Frame = +3

Query: 120 EVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSK 254
           EV  + LGDEWKGYV R+ GGNDKQGFPMKQG++TN RVRLL+SK
Sbjct: 2   EVSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSK 46


>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
          Length = 796

 Score = 36.7 bits (81), Expect = 0.019
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -1

Query: 245 QKTNTAVCQDALFHRESLLVVAASDTKYIALPFIA*LISLYFGAHALFVK 96
           Q+ + A+  D L H +SL V+  SD + ++LP I   +  Y   H L ++
Sbjct: 257 QEADAAIGHDPLLHGKSLFVITTSDPEDVSLPLIPQALPRYLHGHTLVIE 306


>SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)
          Length = 172

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +2

Query: 305 VRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRK 445
           VR C +D   +VLA  +  + A E  GLT+G V    GP R   +++
Sbjct: 86  VRSCPMDKQSTVLA--VETREACESKGLTEGCVSSAFGPGREEPVQE 130


>SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14)
          Length = 273

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = +2

Query: 287 ERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASK-IRKLFNLSK 463
           + K KSV+   VD + S   L   R  AQE   L DG   ++L    A K + K   L K
Sbjct: 191 DNKNKSVKATTVDKSASENKLKRKRNSAQE--NLDDGVKRKKLKDAGAMKSLVKELELEK 248

Query: 464 EDDVRRYVVKRVLPARKEKK 523
             + R  +V+     +KEK+
Sbjct: 249 LVEQRSELVQEKQKKKKEKE 268


>SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)
          Length = 1365

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +3

Query: 126 EADQLGDEWKGYVL--RVAGGNDKQGFPMK 209
           E D+ G EW+G+V      G  D QG+ MK
Sbjct: 815 EEDRTGQEWEGHVCDKEPEGKRDNQGYKMK 844


>SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)
          Length = 291

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 395 GNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVK 493
           G+   + GP + SKI K+    ++DDV+  VVK
Sbjct: 221 GSEAAKTGPNKLSKIDKVILAVEDDDVQEIVVK 253


>SB_29770| Best HMM Match : ig (HMM E-Value=3.4e-05)
          Length = 454

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
 Frame = -3

Query: 690 DSFLFLCASNLAYSASE-NLRLAKTLLLQSETMTSTLQNYRGD*PLDLRCLMSGFSI 523
           D+ L+ C  N    A    +  A  L+    T   T  NY    P++L C   GF +
Sbjct: 304 DAGLYRCYGNTDSKAVRLEVEYAPELIQSESTTQVTWSNYADRDPIELNCTFDGFPV 360


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,583,288
Number of Sequences: 59808
Number of extensions: 485595
Number of successful extensions: 1446
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1442
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)