Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30095
         (848 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)               158   5e-39
SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)         143   2e-34
SB_58662| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_16910| Best HMM Match : EGF (HMM E-Value=0)                         29   6.3  

>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
          Length = 338

 Score =  158 bits (384), Expect = 5e-39
 Identities = 87/174 (50%), Positives = 105/174 (60%), Gaps = 1/174 (0%)
 Frame = +1

Query: 241 PSWTTALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIR 420
           P     L T+WAEH+SE+C+RRFYKNW              W D+ G+KSIE+DF  M +
Sbjct: 95  PRGMRVLKTIWAEHLSEECKRRFYKNWCNSKKKAFTKASKRWADDDGKKSIEEDFNTMKK 154

Query: 421 YCSVVRVIAHTQMKLLKQRQKKAHIMEIQLTVVPS-RTK*NGPENIWRNLSLFDSVFAQD 597
           YC V+RVI HTQ KLLK RQKKAHIMEIQ+        K +       N +    VF+ D
Sbjct: 155 YCKVIRVICHTQQKLLKMRQKKAHIMEIQVNGGKDVAEKVDWCRERLENPAPVRKVFSPD 214

Query: 598 EMIDCIGVTKGQRIQRCHFLVGHTKKLTPVRHTRVFRKVACIGAWHPFLRVSFT 759
           EMID IGVTKG   +   +  G TKKL P +  +  RKVACIGAWHP  RVSF+
Sbjct: 215 EMIDVIGVTKGHGFKGVTYRWG-TKKL-PRKTHKGLRKVACIGAWHP-ARVSFS 265



 Score =  143 bits (346), Expect = 2e-34
 Identities = 63/84 (75%), Positives = 75/84 (89%)
 Frame = +2

Query: 2   FYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEA 181
           F P+KR +RHRGKVK+FPKDD + P HLTAFIG+KAGMTH++RE ++PGSK+NKKE VEA
Sbjct: 15  FLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFIGFKAGMTHILREVEKPGSKLNKKEKVEA 74

Query: 182 VTIIETPPMVCVGVVGYIETPHGL 253
           VTIIETPPM+ VGVVGYIETP G+
Sbjct: 75  VTIIETPPMMVVGVVGYIETPRGM 98


>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
          Length = 347

 Score =  143 bits (346), Expect = 2e-34
 Identities = 63/84 (75%), Positives = 75/84 (89%)
 Frame = +2

Query: 2   FYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEA 181
           F P+KR +RHRGKVK+FPKDD + P HLTAFIG+KAGMTH++RE ++PGSK+NKKE VEA
Sbjct: 63  FLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFIGFKAGMTHILREVEKPGSKLNKKEKVEA 122

Query: 182 VTIIETPPMVCVGVVGYIETPHGL 253
           VTIIETPPM+ VGVVGYIETP G+
Sbjct: 123 VTIIETPPMMVVGVVGYIETPRGM 146



 Score = 86.2 bits (204), Expect = 3e-17
 Identities = 36/72 (50%), Positives = 45/72 (62%)
 Frame = +1

Query: 241 PSWTTALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIR 420
           P     L T+WAEH+SE+C+RRFYKNW              W D+ G+KSIE+DF  M +
Sbjct: 143 PRGMRVLKTIWAEHLSEECKRRFYKNWCNSKKKAFTKASKRWADDDGKKSIEEDFNTMKK 202

Query: 421 YCSVVRVIAHTQ 456
           YC V+RVI HTQ
Sbjct: 203 YCKVIRVICHTQ 214


>SB_58662| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 304 DVDSLQTYAPPRQSKER*SMRGLNVSNNTDTNHRRSLDDGDSL 176
           D DSL  Y P   +K +     + + N T+   R +L DGD+L
Sbjct: 228 DFDSLMHYGPTTFAKSQGLNTIVKLDNTTEFGQRTNLSDGDTL 270


>SB_16910| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1552

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 312 VEATSTVFRHMLRPDSQKSGSP*GVSMYPTTPTQTIGGVSMMVTAST 172
           ++A  T F   L+P   ++GS  G   +    T+ +GG S  VT S+
Sbjct: 62  LDACETFFTICLKPSDGQAGSNSGTCTFGQYTTKVLGGNSFTVTDSS 108


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,280,705
Number of Sequences: 59808
Number of extensions: 676650
Number of successful extensions: 1538
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1533
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)