Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30094
         (751 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58788| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   7e-04
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)                 30   1.7  
SB_52825| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_58788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 458

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 18/32 (56%), Positives = 26/32 (81%)
 Frame = +2

Query: 323 DACAEVFLNLLTHISKDHTIQYILVLIDDILS 418
           D  A+  L+LL  +++DHTI+YILVLIDD+L+
Sbjct: 88  DQLAKTCLSLLVKLTRDHTIRYILVLIDDMLN 119



 Score = 36.7 bits (81), Expect = 0.020
 Identities = 14/24 (58%), Positives = 19/24 (79%)
 Frame = +1

Query: 535 IIAKLACWHPQLMDKSDLHFYLSW 606
           I+AKLACW    + +SDL+F+LSW
Sbjct: 123 IVAKLACWGNVRLPESDLNFFLSW 146



 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 162 IAATSVLQIRASEIRQTQINWQSYLQSQM 248
           + A S L   A E+R+  +NWQSY+  +M
Sbjct: 31  VIAGSRLVADAVEVRKQTVNWQSYVHGKM 59


>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
          Length = 1118

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 456 NSLATFGSPS*IC*TVRIICPAHDCSHHCQA 548
           N L +FG+P+  C T  I CP   C  +C A
Sbjct: 329 NLLFSFGAPAFHCVTPNITCPTKKCCANCTA 359


>SB_52825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1141

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +2

Query: 248  DH*RDHDFIVNLDQRGQKDLPDKNPDACAEVFLNLLTHI 364
            DH R HD I + +     D  D+N   C EV  NLLTH+
Sbjct: 909  DHLRGHD-ICDQEDTCSTDA-DENILICREVLENLLTHV 945


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,817,494
Number of Sequences: 59808
Number of extensions: 454462
Number of successful extensions: 978
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)