Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30089
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41462| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.14 
SB_48853| Best HMM Match : TBCA (HMM E-Value=0.98)                     29   4.0  
SB_2435| Best HMM Match : WD40 (HMM E-Value=4.1e-10)                   28   7.0  
SB_51904| Best HMM Match : CH (HMM E-Value=0.0058)                     28   7.0  
SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_23904| Best HMM Match : RdRP (HMM E-Value=0)                        28   9.2  

>SB_41462| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 220

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 13/16 (81%), Positives = 16/16 (100%)
 Frame = +1

Query: 13  DPRIRQIKIKTGVVKR 60
           DPR+RQ+KIKTG+VKR
Sbjct: 92  DPRLRQLKIKTGIVKR 107



 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +3

Query: 183 VPDDGSRLSKEI--NQSIYRSQNYFRTEQDLKEHEEYITAEQVLK 311
           V D G ++   I  NQ  +  +     E+DL + E+YI A+Q+L+
Sbjct: 170 VVDQGKKVENMIAENQDEHDIKKQAECEKDLSDKEDYIQAKQMLE 214


>SB_48853| Best HMM Match : TBCA (HMM E-Value=0.98)
          Length = 220

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
 Frame = +1

Query: 34  KIKTGVVKRIXXXXXXXXXXXXLQKNRIQRIKDEGQDEHNIRKQEEVLQESLMMVPDCQR 213
           K K  V++ +            +Q+ +I+R+K+EG   H +R+  E     +   P  +R
Sbjct: 21  KKKRAVLEELCEEKVHALSEVKIQQQKIRRLKEEG---HVLRQTAENTNTGIQTPPSTKR 77

Query: 214 RL-IKAYTDLKTTLEQNRTSKNTR-NTL 291
           +L +   T L+  +   R S+  R NT+
Sbjct: 78  QLRVLTPTSLENPMITPRESRRRRVNTI 105


>SB_2435| Best HMM Match : WD40 (HMM E-Value=4.1e-10)
          Length = 1272

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/65 (26%), Positives = 35/65 (53%)
 Frame = +1

Query: 103 QKNRIQRIKDEGQDEHNIRKQEEVLQESLMMVPDCQRRLIKAYTDLKTTLEQNRTSKNTR 282
           Q+   + +K +G D+  + ++    Q+ L+M  + QRR + A  + K T ++ R+    +
Sbjct: 632 QRQLARELKAQG-DQRKLEEEAFYRQQDLVMSAEEQRRKMIAEEERKLTDQRVRSVTEQQ 690

Query: 283 NTLPL 297
           NT+ L
Sbjct: 691 NTVKL 695


>SB_51904| Best HMM Match : CH (HMM E-Value=0.0058)
          Length = 1187

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +1

Query: 103  QKNRIQRIKDEGQDEH-NIRKQEEVLQESLMMVPDCQRRLIKAYTDLKTTLE 255
            ++NR+QR+ DE + +    R++EE  ++  M     +++ + A+ D K  L+
Sbjct: 916  ERNRVQRLLDEDEAKRKRQREEEEAKRKKKMDEEKAKKKELAAWEDAKRKLK 967


>SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1455

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 130 DEGQDEHNIRKQEEVLQESLMMVPDCQRRLIKAYT 234
           D+  DE N+ ++EE+L+++L  + D      K YT
Sbjct: 591 DDDDDEANLEQEEEILEQTLAKLVDEDDDTPKPYT 625


>SB_23904| Best HMM Match : RdRP (HMM E-Value=0)
          Length = 1511

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +1

Query: 178  QESLMMVPDCQRRLIKAYTDLKTTL--EQNRTSKNTRNTLPLNRFSRTLNP 324
            Q SL +  D    L ++ T+++  L     +T+ N R  LPL+    T+NP
Sbjct: 877  QMSLALKSDLADFLCQSATEMRRALPLSNGKTTINPRRALPLSNGKTTINP 927


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,064,029
Number of Sequences: 59808
Number of extensions: 270938
Number of successful extensions: 810
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)