Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30088
(622 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41462| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_32425| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_33543| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_46583| Best HMM Match : Hus1 (HMM E-Value=0) 29 4.0
SB_10214| Best HMM Match : VWA (HMM E-Value=1.30321e-43) 29 4.0
SB_47196| Best HMM Match : Extensin_2 (HMM E-Value=0.02) 28 7.0
SB_36664| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_22158| Best HMM Match : Lipoprotein_15 (HMM E-Value=8.4) 27 9.3
SB_51904| Best HMM Match : CH (HMM E-Value=0.0058) 27 9.3
SB_37954| Best HMM Match : Taeniidae_ag (HMM E-Value=1.5) 27 9.3
>SB_41462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 32.7 bits (71), Expect = 0.25
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = +1
Query: 13 DPRIRQIKIKTGVVKGLPRKK*STRRKQSYRRI 111
DPR+RQ+KIKTG+VK RK RK + RR+
Sbjct: 92 DPRLRQLKIKTGIVK---RKLHWQLRKTAKRRM 121
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +2
Query: 182 VPDDGSRLSKEI--NQSIYRSQNYFRTEQDLKEHEEYITAEQVLK 310
V D G ++ I NQ + + E+DL + E+YI A+Q+L+
Sbjct: 170 VVDQGKKVENMIAENQDEHDIKKQAECEKDLSDKEDYIQAKQMLE 214
>SB_32425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 770
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 390 KSCHNSSYYXLKNKYAFLNVPPPPPTSTQKS 482
KS Y+ L K+ +VP PPP+S++KS
Sbjct: 28 KSYSGIEYHLLNFKHDGTDVPQPPPSSSKKS 58
>SB_33543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 838
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +3
Query: 450 PPPPPTSTQKSFITTNVHPDTSKHKFRHQQGPTIDGPRRIKIRAPN--LLWPPQ*PAT 617
PPPP T+T+K+ ITT + + GP ID P +WPP +T
Sbjct: 649 PPPPSTTTKKTIITT-----LTTMRICAANGPLIDCFYNYSTTLPTHPWIWPPMSTST 701
>SB_46583| Best HMM Match : Hus1 (HMM E-Value=0)
Length = 646
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +2
Query: 500 APRYKQAQVSPPARTYHRRATEDQDSSSKFIMATSVTSH 616
AP + Q +++ T ++++ DQ+S +FI +TS H
Sbjct: 187 APDFTQQEINDILATVTQQSSSDQNSMGRFIASTSPGKH 225
>SB_10214| Best HMM Match : VWA (HMM E-Value=1.30321e-43)
Length = 821
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 111 YSSVALLPSRRLLFPWQSFHNARLDFNLTNSRICH 7
YS+V+ PSR+ + SF L N +RIC+
Sbjct: 473 YSTVSTQPSRKFVLTADSFAGLNLALNAAANRICN 507
>SB_47196| Best HMM Match : Extensin_2 (HMM E-Value=0.02)
Length = 376
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 450 PPPPPTSTQKSFITTNVHPDTSKHKFR 530
PPPP T+ + F+ T PDT+ K R
Sbjct: 225 PPPPWTAPEPDFLLTLPGPDTTVDKAR 251
>SB_36664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 725
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 123 IKDEGQDEHNIRKQEEVLQEYLMMVPDCQRRLIKAY 230
+ +E +DE+ + KQEE ++Y + IK Y
Sbjct: 252 VNEEDEDENEVEKQEEFERKYNFRFEEPDAAFIKTY 287
>SB_22158| Best HMM Match : Lipoprotein_15 (HMM E-Value=8.4)
Length = 184
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Frame = +3
Query: 381 FKTKSCHNSSYYXLK--NKYAFLNVPPPPPTST 473
F SC +Y + KY VPPPPPT T
Sbjct: 97 FDGSSCGKGNYPLMNAVKKYLGGYVPPPPPTGT 129
>SB_51904| Best HMM Match : CH (HMM E-Value=0.0058)
Length = 1187
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +3
Query: 102 QKNRIQRIKDEGQDEH-NIRKQEEVLQEYLMMVPDCQRRLIKAYTDLKTTLE 254
++NR+QR+ DE + + R++EE ++ M +++ + A+ D K L+
Sbjct: 916 ERNRVQRLLDEDEAKRKRQREEEEAKRKKKMDEEKAKKKELAAWEDAKRKLK 967
>SB_37954| Best HMM Match : Taeniidae_ag (HMM E-Value=1.5)
Length = 297
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 450 PPPPPTSTQKSFITTNVHPDTSKHKFRHQQG 542
PPP P + K I V + SKHK ++ G
Sbjct: 97 PPPKPHVSAKELIDEVVKQEMSKHKKKNNDG 127
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,953,308
Number of Sequences: 59808
Number of extensions: 351335
Number of successful extensions: 1399
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1388
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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