Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30087
         (823 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             281   5e-76
SB_4646| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.49 
SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12)              31   0.85 
SB_8101| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.1  
SB_59695| Best HMM Match : ATP-synt_F (HMM E-Value=0.77)               30   2.6  
SB_43174| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_16971| Best HMM Match : zf-C2H2 (HMM E-Value=5.8e-36)               29   3.4  
SB_43217| Best HMM Match : NUMOD3 (HMM E-Value=0.56)                   29   3.4  
SB_55961| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076)              29   4.6  
SB_29563| Best HMM Match : IncA (HMM E-Value=0.37)                     29   4.6  
SB_5854| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.3e-17)            29   4.6  
SB_23885| Best HMM Match : Peptidase_S10 (HMM E-Value=0)               29   4.6  
SB_11713| Best HMM Match : F5_F8_type_C (HMM E-Value=5e-13)            29   4.6  
SB_21353| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.0  
SB_12814| Best HMM Match : IncA (HMM E-Value=1.7)                      29   6.0  
SB_11242| Best HMM Match : MAM (HMM E-Value=0)                         29   6.0  
SB_2656| Best HMM Match : IncA (HMM E-Value=1.7)                       29   6.0  
SB_47822| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_4633| Best HMM Match : IncA (HMM E-Value=0.79)                      28   8.0  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  281 bits (689), Expect = 5e-76
 Identities = 128/172 (74%), Positives = 145/172 (84%)
 Frame = +1

Query: 1   KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 180
           KH+KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G EV KIVK
Sbjct: 431 KHMKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEEVKKIVK 490

Query: 181 QRLIKVDGKVRTEPTYPTGFMRCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 360
           QRLIK+DGKVRT+ TYP GFM    I+KT E FRL+YDVKGRF +HRIT EEAKYKL +V
Sbjct: 491 QRLIKIDGKVRTDTTYPAGFMDVVTIDKTGENFRLLYDVKGRFAVHRITAEEAKYKLGRV 550

Query: 361 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFGLG 516
           +RV  G K VPY+VTHD RTIRYPDP IKVND++ +DI T K++D+IKF  G
Sbjct: 551 RRVDVGAKGVPYIVTHDARTIRYPDPNIKVNDTVVIDIKTGKVIDYIKFDTG 602



 Score = 75.4 bits (177), Expect = 5e-14
 Identities = 35/69 (50%), Positives = 46/69 (66%)
 Frame = +3

Query: 510 SGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTSPRG*TTCS*IGKGTKGVH 689
           +GN+ M+ GGRN+GRVG +  RE+H GSFDIVH+KD+TGH      T    IGKG K  +
Sbjct: 601 TGNMAMVVGGRNMGRVGMVTHREKHAGSFDIVHVKDATGHQFATRLTNIFVIGKGNK-PY 659

Query: 690 LRCRAGKGL 716
           +    GKG+
Sbjct: 660 VSLPKGKGV 668


>SB_4646| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 329

 Score = 32.3 bits (70), Expect = 0.49
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -2

Query: 753 LCPRFLRRMVKAEALCPRGSEDVRPSCP 670
           +CPRF R M+    LCPRG+ D+   CP
Sbjct: 72  MCPRFNRDMLD---LCPRGTRDMLEMCP 96



 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 753 LCPRFLRRMVKAEALCPRGSEDVRPSCP 670
           LCPR  R M++   +CPRG+ D+   CP
Sbjct: 83  LCPRGTRDMLE---MCPRGTRDMLVMCP 107



 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 753 LCPRFLRRMVKAEALCPRGSEDVRPSCP 670
           +CPR  R M+    +CPRG+ D+   CP
Sbjct: 28  MCPRGTRDML---VMCPRGTRDMPVMCP 52


>SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12)
          Length = 1290

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +2

Query: 563  HRVPRETSRLLRHC-AHQG-LHGTHFATRLNNVFINRQGHEGRTSSLPRGQRASA 721
            H +PR       H   H+G +H  H A R ++   +  GH+G+   +PR QRAS+
Sbjct: 978  HPIPRAQRASSSHPPGHKGQVHSIHRAQRASSS--HPTGHKGQVHPIPRAQRASS 1030



 Score = 29.9 bits (64), Expect = 2.6
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
 Frame = +2

Query: 563  HRVPRETSRLLRHCAHQG-LHGTHFATRLNNV--------FINRQGHEGRTSSLPRGQRA 715
            HR  R +S       H+G +H  H+A R ++         FI   GH+G+   +PR QRA
Sbjct: 867  HRAQRASSS--HPTGHKGQVHPIHWAQRASSSHPPGTKGKFIPSTGHKGQVHPIPRAQRA 924

Query: 716  SA 721
            S+
Sbjct: 925  SS 926


>SB_8101| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 464

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 699 RAGKGLPPSPFAEGSGDKAHSRPKVRPRIRGFRDQF 806
           RA  GL PS    G G    +R K++ R+R  R++F
Sbjct: 361 RARHGLAPSEKKAGKGPSLETREKMKKRLREIREEF 396


>SB_59695| Best HMM Match : ATP-synt_F (HMM E-Value=0.77)
          Length = 229

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 699 RAGKGLPPSPFAEGSGDKAHSRPKVRPRIRGFRDQF 806
           RA  GL P     G G    +R K++ R+R  R++F
Sbjct: 188 RARHGLAPRDKKSGKGPSLKAREKIKKRLREIREEF 223


>SB_43174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 384

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 699 RAGKGLPPSPFAEGSGDKAHSRPKVRPRIRGFRDQF 806
           RA  GL P     G G    +R K++ R+R  R++F
Sbjct: 159 RARHGLAPGDKKSGKGPSLEAREKMKKRLREIREEF 194


>SB_16971| Best HMM Match : zf-C2H2 (HMM E-Value=5.8e-36)
          Length = 477

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 699 RAGKGLPPSPFAEGSGDKAHSRPKVRPRIRGFRDQF 806
           RA  GL P     G G    +R K++ R+R  R++F
Sbjct: 188 RARHGLAPRDKKSGKGPSLETREKMKKRLREIREEF 223


>SB_43217| Best HMM Match : NUMOD3 (HMM E-Value=0.56)
          Length = 311

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 699 RAGKGLPPSPFAEGSGDKAHSRPKVRPRIRGFRDQF 806
           RA  GL P     G G    +R K++ R+R  R++F
Sbjct: 270 RARHGLAPREKKSGKGHSLETREKMKKRLREIREEF 305


>SB_55961| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 756 ALCPRFLRRMVKAEALCPRGSEDVRPSCPCRFMNTL 649
           ++C RF+R +   + +C   S  V   C CRF++ L
Sbjct: 139 SICQRFVRCLCTLKRVCRFVSRQVDKICQCRFVSPL 174


>SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076)
          Length = 1269

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 662 NRQGHEGRTSSLPRGQRASAFTIRRRKRGQS 754
           N + +EGR  +  RG RAS  +  RR RGQ+
Sbjct: 52  NHENNEGRNRNDNRGNRASQDSGNRRDRGQT 82


>SB_29563| Best HMM Match : IncA (HMM E-Value=0.37)
          Length = 223

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 699 RAGKGLPPSPFAEGSGDKAHSRPKVRPRIRGFRDQF 806
           RA  GL P       G    +R K++ R+R FR++F
Sbjct: 186 RARHGLAPREKKSRKGSSLETREKMKKRLREFREEF 221


>SB_5854| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.3e-17)
          Length = 1850

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 27/78 (34%), Positives = 31/78 (39%)
 Frame = -1

Query: 769  FGRECALSPLPSANGEGGSPLPARQRRCTPFVPLPIYEHVVQPRGEVCPVESLMCTMSKE 590
            F  EC + P   A      P PA +R  TP VP    E  V P   + P  SL    S  
Sbjct: 1547 FPDECQMPPPDPAERRVSPPFPAERRTPTP-VPA---ERRVSPPSRL-PPPSLHIRPSDR 1601

Query: 589  PGCLSRDTMVPTRPKLRP 536
            PG  +  T  P  P  RP
Sbjct: 1602 PGMTA--TPPPPLPTRRP 1617


>SB_23885| Best HMM Match : Peptidase_S10 (HMM E-Value=0)
          Length = 446

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = -3

Query: 647 STSWRSVSRGVLDVHNVEGAGMSLAGHDGAHTPQVT 540
           +TSW  V+  VL V N  GAG S     GA+T  VT
Sbjct: 97  NTSWVEVAN-VLFVDNPVGAGFSYVTDKGAYTTNVT 131


>SB_11713| Best HMM Match : F5_F8_type_C (HMM E-Value=5e-13)
          Length = 516

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 699 RAGKGLPPSPFAEGSGDKAHSRPKVRPRIRGFRDQF 806
           RA  GL P     G G    +R K++ R+R  R++F
Sbjct: 185 RARHGLAPRDKKSGKGPSLEAREKMKKRLREVREEF 220


>SB_21353| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 724

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 699 RAGKGLPPSPFAEGSGDKAHSRPKVRPRIRGFRDQF 806
           RA  GL P     G G    +R K++ R+R  R++F
Sbjct: 683 RARHGLAPREKKSGKGHSLGTREKMKKRLREIREEF 718


>SB_12814| Best HMM Match : IncA (HMM E-Value=1.7)
          Length = 226

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 699 RAGKGLPPSPFAEGSGDKAHSRPKVRPRIRGFRDQF 806
           RA  GL P     G G    +R K++ R+R  R++F
Sbjct: 185 RARHGLAPREKKSGKGHSLGTREKMKKRLREIREEF 220


>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
          Length = 348

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
 Frame = +3

Query: 126 EES--SEVCFDRKRSPENCE 179
           EES  +E+C DRKR P++CE
Sbjct: 76  EESRYNELCHDRKRGPDDCE 95


>SB_2656| Best HMM Match : IncA (HMM E-Value=1.7)
          Length = 226

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 699 RAGKGLPPSPFAEGSGDKAHSRPKVRPRIRGFRDQF 806
           RA  GL P     G G    +R K++ R+R  R++F
Sbjct: 185 RARHGLAPREKKSGKGHSLGTREKMKKRLREIREEF 220


>SB_47822| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 430

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 699 RAGKGLPPSPFAEGSGDKAHSRPKVRPRIRGFRDQF 806
           RA  GL P     G G    +R K++ R+R  R++F
Sbjct: 389 RARHGLAPHDKKSGKGPSLVAREKMKKRLRKIREEF 424


>SB_4633| Best HMM Match : IncA (HMM E-Value=0.79)
          Length = 413

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 699 RAGKGLPPSPFAEGSGDKAHSRPKVRPRIRGFRDQF 806
           RA  GL P     G G    +R K++ R+R  R++F
Sbjct: 372 RARHGLAPHDKKSGKGPSLVAREKMKKRLRKIREEF 407


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,597,532
Number of Sequences: 59808
Number of extensions: 707056
Number of successful extensions: 2303
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2296
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2299585728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)