Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30086
         (825 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)                 52   4e-07
SB_41219| Best HMM Match : EF1G (HMM E-Value=3.3e-38)                  46   3e-05
SB_4795| Best HMM Match : CLN3 (HMM E-Value=0.058)                     32   0.65 
SB_1648| Best HMM Match : UPF0061 (HMM E-Value=5.2e-10)                31   1.1  
SB_22289| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_54573| Best HMM Match : Bacterial_GLE1 (HMM E-Value=8.4)            30   2.6  
SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_7485| Best HMM Match : DUF1582 (HMM E-Value=2.7)                    29   4.6  
SB_47423| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_45563| Best HMM Match : TMS_TDE (HMM E-Value=2.2e-10)               29   6.1  
SB_24051| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_16163| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_5831| Best HMM Match : TolA (HMM E-Value=0.0037)                    29   6.1  
SB_3701| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.0  

>SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)
          Length = 203

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
 Frame = +1

Query: 355 LSSDWQVDYESYDWKKLDPSSEETKKLVQDYF-SWNGTDKDGRKFNQGKIFK 507
           L+ DW VD  SY  ++L+P     KKL++DYF         G+KFNQGK+FK
Sbjct: 152 LNEDWNVDAPSYTSRRLNPDDPADKKLIEDYFIQREELTYRGKKFNQGKVFK 203


>SB_41219| Best HMM Match : EF1G (HMM E-Value=3.3e-38)
          Length = 90

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 23/61 (37%), Positives = 36/61 (59%)
 Frame = +1

Query: 136 RRNYSHLGMPEYQITPEETRLKVFMSCNLYYGYVPEVRQKRKQAFASVCLFGEDNNSTIS 315
           +  YS L   EY+   E+    VFM+CNL  G +  + +  K  F S+C+FGE++N +I+
Sbjct: 31  KEGYS-LWFLEYKEEYEKDLGMVFMACNLVGGMIQRLEKLVKNGFGSICIFGENHNCSIA 89

Query: 316 G 318
           G
Sbjct: 90  G 90


>SB_4795| Best HMM Match : CLN3 (HMM E-Value=0.058)
          Length = 878

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 21/83 (25%), Positives = 33/83 (39%)
 Frame = +2

Query: 374 WTTSPTTGRNWILRARRPRNLSRTTSRGTEPTKTVESSTRARYSSNADKRPANVYTFHTI 553
           +T S  TG N+ + A    N + T   G+  T T  + +     S       + YT    
Sbjct: 237 YTVSAHTGSNYTMTAYTGSNYTVTAHTGSNYTMTAHTGSLLYQDSVPGAYTGSNYTMTAY 296

Query: 554 TIKNFTKKKHSNVNRWMLAIFGT 622
           T  N+T   H+  +  M A  G+
Sbjct: 297 TGSNYTMTAHTGSSYTMTAYTGS 319



 Score = 31.5 bits (68), Expect = 0.86
 Identities = 24/84 (28%), Positives = 39/84 (46%)
 Frame = +2

Query: 377 TTSPTTGRNWILRARRPRNLSRTTSRGTEPTKTVESSTRARYSSNADKRPANVYTFHTIT 556
           TT+  T  ++I+ A    N + T   G+    TV + T + Y+ +A     + YT    T
Sbjct: 198 TTTAHTVSSYIMTAHTGSNYTMTAHTGSN--YTVTAHTGSNYTVSA--HTGSNYTMTAYT 253

Query: 557 IKNFTKKKHSNVNRWMLAIFGTVL 628
             N+T   H+  N  M A  G++L
Sbjct: 254 GSNYTVTAHTGSNYTMTAHTGSLL 277



 Score = 31.1 bits (67), Expect = 1.1
 Identities = 21/83 (25%), Positives = 38/83 (45%)
 Frame = +2

Query: 374 WTTSPTTGRNWILRARRPRNLSRTTSRGTEPTKTVESSTRARYSSNADKRPANVYTFHTI 553
           +T +  TG N+ + A    N + T   G+    T  + T + Y+  A  +  ++YT    
Sbjct: 671 YTMTAYTGSNYTVTAHTGSNYTMTAYTGSNYAMT--AYTGSSYTMTA--QTGSIYTMKAR 726

Query: 554 TIKNFTKKKHSNVNRWMLAIFGT 622
           T+ N+T   ++  N  M A  G+
Sbjct: 727 TVSNYTMTAYTGSNYTMTARTGS 749



 Score = 28.7 bits (61), Expect = 6.1
 Identities = 22/82 (26%), Positives = 35/82 (42%)
 Frame = +2

Query: 374 WTTSPTTGRNWILRARRPRNLSRTTSRGTEPTKTVESSTRARYSSNADKRPANVYTFHTI 553
           +T +  TG N+ + A    + + T   G+  T T  + T + Y+  A    +  YT    
Sbjct: 391 YTMTAYTGSNYTMTAYTESSYTMTAHTGSNYTMT--AYTGSNYTITAYTESS--YTMTAY 446

Query: 554 TIKNFTKKKHSNVNRWMLAIFG 619
           T  N+T   H+  N  M A  G
Sbjct: 447 TGSNYTMTAHTGSNYTMTAYTG 468



 Score = 28.3 bits (60), Expect = 8.0
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
 Frame = +2

Query: 374 WTTSPTTGRNWILRARRPRNLSRTTSRGTEPTKTVESS---TRARYSSNADKRPANVYTF 544
           +T +  TG N+ + A    N + T   G+  T T  +    T   Y+ +     A    +
Sbjct: 481 YTMTAYTGSNYTMTAHTVSNYTMTARTGSSYTMTAYTGSNYTMTAYTGSNFTMTALHSAY 540

Query: 545 HTITI---KNFTKKKHSNVNRWMLAIFGT 622
           +T+T     N+T   H+  N  M A  G+
Sbjct: 541 YTMTAYTGSNYTMTAHTGYNYTMTAYTGS 569


>SB_1648| Best HMM Match : UPF0061 (HMM E-Value=5.2e-10)
          Length = 371

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 180 GNLVFGHTQMGIVPPGA 130
           GNL  GH + G++PPGA
Sbjct: 248 GNLTLGHIEQGVIPPGA 264


>SB_22289| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1102

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 257 ANRLSHPSACLVKTTI-PPSPECGCGAERSSCSRCRLIGRW 376
           +N  S   + LV+ +  PPSP C C A       C+ IG W
Sbjct: 137 SNSASKVRSVLVEISARPPSPRCKCPAVIDGGMSCQFIGAW 177


>SB_54573| Best HMM Match : Bacterial_GLE1 (HMM E-Value=8.4)
          Length = 171

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 364 QTTAGTRAPFRATPTLRRWWNCCLHQTG 281
           Q  AG + P     TLRRW   C+ Q G
Sbjct: 78  QALAGEKRPQTTADTLRRWIKSCMEQAG 105


>SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = +2

Query: 422 RPRNLSRTTSRGTEPTK-TVESSTRARYSS---NADKRPANVYTFHTITIKNFTKKKHSN 589
           RPR+ +R T   T+P + T  S T  R+++   N   RP N       T ++ T K+HS 
Sbjct: 63  RPRHAARPT-HDTQPDQHTTHSQTDTRHAARPTNDTARPTNDTQPDRHTTRSQTNKRHSQ 121

Query: 590 VN 595
            N
Sbjct: 122 TN 123


>SB_7485| Best HMM Match : DUF1582 (HMM E-Value=2.7)
          Length = 290

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 17/70 (24%), Positives = 29/70 (41%)
 Frame = +2

Query: 380 TSPTTGRNWILRARRPRNLSRTTSRGTEPTKTVESSTRARYSSNADKRPANVYTFHTITI 559
           T PT+  N +  ++         +RG  P+  + + +R R     D +  N       T+
Sbjct: 68  TFPTSSHNSLRASQEVLGRCVGEARGDLPSDKLNAKSRRRSQHELDDQDENFLQHRLATL 127

Query: 560 KNFTKKKHSN 589
            N  KK +SN
Sbjct: 128 SNSHKKTNSN 137


>SB_47423| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 855

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
 Frame = +1

Query: 142 NYSHLGMPEYQITPEETRLKV--FMSCNLYYGYVPEVRQKRK-QAFASVCLFGEDNNSTI 312
           N  HL  PEYQ+T E+  L +      +     V    +KR     A + L G ++ S +
Sbjct: 743 NCRHLTYPEYQVTSEDRELVIPDITKPHPINVCVKSKEKKRNIDRIARIGLIGLNSQSLV 802

Query: 313 SGVWVWRGKELVFPLSSDWQV 375
            G+ +    E  + L + W+V
Sbjct: 803 YGLILSADNENGYRLLNKWRV 823


>SB_45563| Best HMM Match : TMS_TDE (HMM E-Value=2.2e-10)
          Length = 246

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 336 SAPHPHSGDGGIVVFTKQADGCESLFALLSNL 241
           S PHP  GDGG ++   + +G E  ++    L
Sbjct: 138 SRPHPRQGDGGKLLIEDELNGVEYSYSFFHTL 169


>SB_24051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 889

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 344 SSFPRHTHTPEMVELLSSPNRQTDAKACLR 255
           S+ PR   + E + LL  P  + DA+AC+R
Sbjct: 413 SAIPRSRRSFESLPLLQQPTSRRDARACVR 442


>SB_16163| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 853

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 380 TSPTTGRNWILRARRPRNLSRTTSRGTEPTKTVESSTRARYSSNA 514
           T P   +N   +  RP NLSR+ +R   P + V +   A  S N+
Sbjct: 771 TRPARKKNPAKKGTRPANLSRSRTRSNIPVQKVLAEQAAANSPNS 815


>SB_5831| Best HMM Match : TolA (HMM E-Value=0.0037)
          Length = 703

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/21 (66%), Positives = 15/21 (71%)
 Frame = +2

Query: 437 SRTTSRGTEPTKTVESSTRAR 499
           SRT SRG EPTKT  S + AR
Sbjct: 668 SRTLSRGREPTKTSLSKSPAR 688


>SB_3701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 26/93 (27%), Positives = 37/93 (39%)
 Frame = +2

Query: 251 KSANRLSHPSACLVKTTIPPSPECGCGAERSSCSRCRLIGRWTTSPTTGRNWILRARRPR 430
           +S+NR+  PS     +     P         S +R +   R T S         RA    
Sbjct: 64  ESSNRVKQPSQATESSNRVKQPS----QATESSNRVKQPSRATESSNRVEQ-PSRATESS 118

Query: 431 NLSRTTSRGTEPTKTVESSTRARYSSNADKRPA 529
           N     SR TE +  VE  ++A  SSN  K+P+
Sbjct: 119 NRVEQPSRATESSNRVEQPSQATESSNRVKQPS 151


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,199,728
Number of Sequences: 59808
Number of extensions: 663386
Number of successful extensions: 1801
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1795
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2311562737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)