Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30085
         (848 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12605| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.89 
SB_1700| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.2  
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)                    29   3.6  
SB_15500| Best HMM Match : Fork_head (HMM E-Value=1.7e-39)             29   6.3  
SB_30265| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_26485| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_12605| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -3

Query: 270 IIVEFLNAREHFSFSNCST*LRTSGVLIASAGQLGVRIPTSMESP 136
           ++V    +R H S S  +   RTS +L AS G   VR P+  E+P
Sbjct: 71  VVVNSYRSRSHSSASQAAEGSRTSSMLDASGGSKVVRRPSEGEAP 115


>SB_1700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = +1

Query: 334 NNDYEPVTPKSESQLESDNEDRRTHLSKRKHLDSDDSD 447
           NN+Y  V+ +S+  +  D++DRR  ++   + +SDDSD
Sbjct: 46  NNNY--VSDESDDLVPFDHDDRRNIINNNNNYESDDSD 81


>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 4833

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 542  DRNRLGPEEEADPPRDETAHYHPHAAFDENSSNISTS 652
            DR + GP   +DP     +H HPH  +  NS + ++S
Sbjct: 4602 DRRQFGPHR-SDPRNRGPSHLHPHRKWRTNSMDTTSS 4637


>SB_15500| Best HMM Match : Fork_head (HMM E-Value=1.7e-39)
          Length = 554

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 543 IATGWDQKKRPTPQETRQHTIIHMQHLMKTHQIFLLQ 653
           I +G  Q+K+ + +    H ++H QH  +T  I+ LQ
Sbjct: 238 ILSGEKQEKKSSDEHQDIHPLVHRQHCPETADIYKLQ 274


>SB_30265| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 589

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 349 PVTPKSESQLESDNEDRRTHLSKRKHLDSDDSDETYTP 462
           PV+ +   + +S  ED  T  +  K L+ +D DE +TP
Sbjct: 234 PVSSRKRLRSDSAIEDPNTRSAADKILNDNDDDEDFTP 271


>SB_26485| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 801

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 349 PVTPKSESQLESDNEDRRTHLSKRK 423
           PV P  E  L+   EDR  HL K+K
Sbjct: 699 PVLPSIEKALDKATEDRMNHLMKQK 723


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,341,076
Number of Sequences: 59808
Number of extensions: 540983
Number of successful extensions: 1724
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1723
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)