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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30082
         (859 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3577| Best HMM Match : No HMM Matches (HMM E-Value=.)               81   1e-15
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                32   0.52 
SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.52 
SB_28158| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_27380| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_5266| Best HMM Match : VWA (HMM E-Value=0)                          29   4.8  
SB_39797| Best HMM Match : VWA (HMM E-Value=6e-26)                     29   4.8  
SB_39196| Best HMM Match : Phage_GP20 (HMM E-Value=3.9)                29   4.8  
SB_29369| Best HMM Match : GIY-YIG (HMM E-Value=0.56)                  29   4.8  
SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_413| Best HMM Match : Phage_GP20 (HMM E-Value=3.9)                  29   4.8  
SB_26934| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051)                29   6.4  
SB_32615| Best HMM Match : TetR_N (HMM E-Value=8.2)                    28   8.5  
SB_54287| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_19903| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_15617| Best HMM Match : Glycoprotein_G (HMM E-Value=4.8)            28   8.5  
SB_766| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   8.5  

>SB_3577| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1164

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 50/91 (54%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
 Frame = +1

Query: 1    QLFISADRPNVAGLILAGSADFKTELSQSDMFDPRLQAKIIKLVDVSYGGENGFNQAIEL 180
            QLFI+ D+PN+ G+ILAGSADFK+ELSQSDMFD                      QAIEL
Sbjct: 988  QLFITNDKPNITGMILAGSADFKSELSQSDMFD----------------------QAIEL 1025

Query: 181  AAESLQNVKFIQEKKLIGRYF-DEISRTQES 270
            A+E L NVKFIQEKKLIG+Y   E+   QE+
Sbjct: 1026 ASEVLANVKFIQEKKLIGKYLVGEVYSRQET 1056



 Score = 51.6 bits (118), Expect = 8e-07
 Identities = 22/26 (84%), Positives = 25/26 (96%)
 Frame = +2

Query: 509  NYKSFGATLEIITDKSQEGSQFVRGF 586
            NYK+FGATLEIITDKSQEG+QF +GF
Sbjct: 1094 NYKNFGATLEIITDKSQEGAQFCKGF 1119



 Score = 35.9 bits (79), Expect = 0.042
 Identities = 16/19 (84%), Positives = 17/19 (89%)
 Frame = +3

Query: 450  ESGVELELVECQPLLEWLA 506
            ESGVELELV+  PLLEWLA
Sbjct: 1074 ESGVELELVDKNPLLEWLA 1092


>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1973

 Score = 32.3 bits (70), Expect = 0.52
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +3

Query: 285  DDTLRALELGSVETLICWENLDIQRYVLKSHATNQETILH--LTPEQEKDKSHFT 443
            DDT R LE+   E L C+     QRYV K +    +T+ H  LT   ++   HFT
Sbjct: 1324 DDTCRELEVAKSEYLYCY-----QRYVYKCNERKMKTLKHRILTHFSQELVGHFT 1373


>SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1176

 Score = 32.3 bits (70), Expect = 0.52
 Identities = 20/76 (26%), Positives = 33/76 (43%)
 Frame = +1

Query: 331 SAGRTSTYKDTY*SRMPPTRKQFST*RLNKRRTNHISPTKRAEWSWSLWSASRCWSGWPK 510
           SAG T++Y + Y S   P   Q      N    N I+P   + W+ S+  +S+      +
Sbjct: 765 SAGNTTSYSNGYQSSAYPLINQTDNMN-NTEMNNMINPDNSSSWNSSIDGSSQQKMNARE 823

Query: 511 LQVVWCHLRDHHGQEP 558
           L + W      +G +P
Sbjct: 824 LYMAWLKKEHENGDKP 839


>SB_28158| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 256

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
 Frame = -1

Query: 838 NFSCWGPRSG---FRPKKANPGYKQNGNRPFLKTRGNLAPFPSKCLPSLNKSVELSVIRL 668
           N S W P SG         N    Q  N    KTR N+ P     L  LN+  ++ +   
Sbjct: 149 NKSTWTPSSGRDNSLDTSPNSVKLQIQNSTLNKTRSNITPGERNALTQLNQRQDIIIKPA 208

Query: 667 VEFPRSVEAASDWKVQLCN 611
            +   +V    DW +  CN
Sbjct: 209 DKGSGTVVMDKDWYINECN 227


>SB_27380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 509

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
 Frame = -1

Query: 838 NFSCWGPRSGFRPKK---ANPGYKQNGNRPFLKTRGNLAPFPSKCLPSLNKSVELSVIRL 668
           N S W P SG         N    Q  N    KTR N+ P     L  LN+  ++ +   
Sbjct: 70  NKSTWTPSSGRDNSLDTFLNSVKLQIQNSTLNKTRSNITPGERNALTQLNQKQDIIIKPA 129

Query: 667 VEFPRSVEAASDWKVQLCN 611
            +   +V    DW +  CN
Sbjct: 130 DKGSGTVVMDKDWYINECN 148


>SB_5266| Best HMM Match : VWA (HMM E-Value=0)
          Length = 797

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 18/62 (29%), Positives = 33/62 (53%)
 Frame = +1

Query: 19  DRPNVAGLILAGSADFKTELSQSDMFDPRLQAKIIKLVDVSYGGENGFNQAIELAAESLQ 198
           D+PNV  +I  G      E + S +  P L AK ++++ V  GG+   ++ + +A +  +
Sbjct: 69  DKPNVLIVITDGKIHPNFEDNYSKVIPP-LIAKGVRIIAVGVGGQVKKSELLTIANKKAE 127

Query: 199 NV 204
           NV
Sbjct: 128 NV 129


>SB_39797| Best HMM Match : VWA (HMM E-Value=6e-26)
          Length = 317

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 18/62 (29%), Positives = 33/62 (53%)
 Frame = +1

Query: 19  DRPNVAGLILAGSADFKTELSQSDMFDPRLQAKIIKLVDVSYGGENGFNQAIELAAESLQ 198
           D+PNV  +I  G      E + S +  P L AK ++++ V  GG+   ++ + +A +  +
Sbjct: 233 DKPNVLIVITDGKIHPNFEDNYSKVIPP-LIAKGVRIIAVGVGGQVKKSELLTIANKKAE 291

Query: 199 NV 204
           NV
Sbjct: 292 NV 293


>SB_39196| Best HMM Match : Phage_GP20 (HMM E-Value=3.9)
          Length = 201

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
 Frame = -1

Query: 838 NFSCWGPRSGFRPKK---ANPGYKQNGNRPFLKTRGNLAPFPSKCLPSLNKSVELSVIRL 668
           N S W P SG         N    Q  N    KTR N+ P     L  LN+  ++ +   
Sbjct: 30  NKSTWTPSSGRDNSLDTFLNSVKLQIQNSTLNKTRSNITPGERNALTQLNQRQDIIIKPA 89

Query: 667 VEFPRSVEAASDWKVQLCN 611
            +   +V    DW +  CN
Sbjct: 90  DKGSGTVVMDKDWYINECN 108


>SB_29369| Best HMM Match : GIY-YIG (HMM E-Value=0.56)
          Length = 785

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
 Frame = -1

Query: 838 NFSCWGPRSGFRPKK---ANPGYKQNGNRPFLKTRGNLAPFPSKCLPSLNKSVELSVIRL 668
           N S W P SG         N    Q  N    KTR N+ P     L  LN+  ++ +   
Sbjct: 349 NKSTWTPSSGRDNSLDTFLNSVKLQIQNSTLNKTRSNITPGERNALTQLNQRQDIIIKPA 408

Query: 667 VEFPRSVEAASDWKVQLCN 611
            +   +V    DW +  CN
Sbjct: 409 DKGSGTVVMDKDWYINECN 427


>SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1455

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
 Frame = -1

Query: 838 NFSCWGPRSGFRPKK---ANPGYKQNGNRPFLKTRGNLAPFPSKCLPSLNKSVELSVIRL 668
           N S W P SG         N    Q  N    KTR N+ P     L  LN+  ++ +   
Sbjct: 113 NKSTWTPSSGRDNSLDTFLNSVKLQIQNSTLNKTRSNITPGERNALTQLNQRQDIIIKPA 172

Query: 667 VEFPRSVEAASDWKVQLCN 611
            +   +V    DW +  CN
Sbjct: 173 DKGSGTVVMDKDWYINECN 191


>SB_413| Best HMM Match : Phage_GP20 (HMM E-Value=3.9)
          Length = 179

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
 Frame = -1

Query: 838 NFSCWGPRSGFRPKK---ANPGYKQNGNRPFLKTRGNLAPFPSKCLPSLNKSVELSVIRL 668
           N S W P SG         N    Q  N    KTR N+ P     L  LN+  ++ +   
Sbjct: 8   NKSTWTPSSGRDNSLDTFLNSVKLQIQNSTLNKTRSNITPGERNALTQLNQRQDIIIKPA 67

Query: 667 VEFPRSVEAASDWKVQLCN 611
            +   +V    DW +  CN
Sbjct: 68  DKGSGTVVMDKDWYINECN 86


>SB_26934| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051)
          Length = 1443

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
 Frame = -1

Query: 838 NFSCWGPRSGFRPKK---ANPGYKQNGNRPFLKTRGNLAPFPSKCLPSLNKSVELSVIRL 668
           N S W P SG         N    Q  N    KTR N+ P     L  LN+  ++ +   
Sbjct: 216 NKSSWTPSSGRDNSLDTFLNSVKLQIQNSTLNKTRSNITPGERHALTQLNQRQDIIIKLA 275

Query: 667 VEFPRSVEAASDWKVQLCN 611
            +   +V    DW +  CN
Sbjct: 276 DKGSGTVVMDKDWYINECN 294


>SB_32615| Best HMM Match : TetR_N (HMM E-Value=8.2)
          Length = 114

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 272 LLRCR*YTARSRTR-IRRDVDLLGEPRHTKIRI 367
           LL CR Y     TR +RR VD + EPR T++RI
Sbjct: 58  LLPCRIYLFGFGTRTVRRFVDDIIEPRMTRLRI 90


>SB_54287| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -1

Query: 751 KTRGNLAPFPSKCLPSLNKSVELSVIRLVEFPRSVEAASDWKVQLCN 611
           KTR N+ P     L  LN+  E+ +    +   +V    DW +  CN
Sbjct: 24  KTRSNITPGERNALTQLNQRQEIIIKPADKGSGTVVMDKDWYINECN 70


>SB_19903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 560

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 823 GPRSGFRPKKANPGYKQNGNRPFLKTRG 740
           GPR G+   ++ PGYK  G  P  +  G
Sbjct: 448 GPRPGYGLTRSRPGYKLTGQHPGYEMTG 475


>SB_15617| Best HMM Match : Glycoprotein_G (HMM E-Value=4.8)
          Length = 554

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
 Frame = -3

Query: 401 ENCFLVGGMRLQYVSLYVEVLPADQRLDG--SEFESAQCIIDTEAILS---CVLEISSK* 237
           +NC     +  +   +Y     A ++  G  S +ESA C++D+E +++   CV+ + +K 
Sbjct: 49  KNCEFQAFLATESPDIYKRTFEAVEQCGGRTSLYESADCLVDSENLVASNCCVMMVDAKE 108

Query: 236 R 234
           R
Sbjct: 109 R 109


>SB_766| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1704

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
 Frame = +1

Query: 373  RMPPTRKQFST*RLN----KRRTNHISPTKRAEWSWSLWSASRCWSGWPKLQVVWCHLRD 540
            R P TR+ +    L     K  T   SP      +W+  +   C   +  + V+  HL+ 
Sbjct: 1027 RRPETRENYFNSLLAHIRIKAGTRKKSPVSARIRTWAT-AVEGCGKVFAAMGVLTSHLKS 1085

Query: 541  HHGQEPGGKPV 573
            H G+ P G PV
Sbjct: 1086 HSGERPHGCPV 1096


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,289,670
Number of Sequences: 59808
Number of extensions: 667387
Number of successful extensions: 1985
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1983
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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