Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30079
(872 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6892| Best HMM Match : TSP_3 (HMM E-Value=2.94273e-44) 81 1e-15
SB_12801| Best HMM Match : TSP_3 (HMM E-Value=2.3e-39) 75 1e-13
SB_6443| Best HMM Match : TSP_C (HMM E-Value=0) 68 1e-11
SB_22603| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 2e-08
SB_26267| Best HMM Match : TSP_C (HMM E-Value=0) 50 2e-06
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.8
SB_46775| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-27) 30 2.8
SB_31478| Best HMM Match : Extensin_2 (HMM E-Value=1.3) 29 5.0
SB_44890| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_7560| Best HMM Match : Metallothio_PEC (HMM E-Value=1.3) 28 8.7
>SB_6892| Best HMM Match : TSP_3 (HMM E-Value=2.94273e-44)
Length = 749
Score = 81.0 bits (191), Expect = 1e-15
Identities = 37/83 (44%), Positives = 45/83 (54%)
Frame = +1
Query: 259 GNACDNCPRHYNPRQEXXXXXXXXXXXXXXXXXXXIPNQVDNCPRKYNPQQDDMDSDGVG 438
G++CDNCPR +N RQ I DNCP YNP+Q D D DG G
Sbjct: 412 GDSCDNCPRVWNKRQRDANGDGRGDACTADPDDDGIEGSHDNCPMHYNPEQLDRDRDGFG 471
Query: 439 DVCDNCPRVRNTNQEDTDKDNVG 507
D CDNCP V N NQ DT+++ +G
Sbjct: 472 DTCDNCPAVPN-NQSDTNQNLIG 493
Score = 80.2 bits (189), Expect = 2e-15
Identities = 35/81 (43%), Positives = 44/81 (54%)
Frame = +2
Query: 2 NGTVCGLDRDLDGHPDEQLPCNEPRCKKDNCPDVSNSGQEXXXXXXXXXXXXXXXXXXXI 181
NG CG D DLDG PD++LPC E C+ DNCP NSGQE +
Sbjct: 329 NGIECGQDEDLDGFPDKKLPCYEASCQGDNCPLTPNSGQEDTDSDGVGDACDDDDDNDGV 388
Query: 182 PNFPDNCPLTPNPDQLDDDEN 244
+ DNCPL NP+Q+D D++
Sbjct: 389 RDIRDNCPLISNPEQMDTDQD 409
Score = 64.5 bits (150), Expect = 1e-10
Identities = 33/84 (39%), Positives = 38/84 (45%)
Frame = +1
Query: 271 DNCPRHYNPRQEXXXXXXXXXXXXXXXXXXXIPNQVDNCPRKYNPQQDDMDSDGVGDVCD 450
DNCP N QE + + DNCP NP+Q D D D +GD CD
Sbjct: 357 DNCPLTPNSGQEDTDSDGVGDACDDDDDNDGVRDIRDNCPLISNPEQMDTDQDTIGDSCD 416
Query: 451 NCPRVRNTNQEDTDKDNVGARATA 522
NCPRV N Q D + D G TA
Sbjct: 417 NCPRVWNKRQRDANGDGRGDACTA 440
Score = 52.4 bits (120), Expect = 5e-07
Identities = 27/58 (46%), Positives = 31/58 (53%), Gaps = 13/58 (22%)
Frame = +1
Query: 373 QVDNCPRKYNPQQDDMDSDGVGDVC-------------DNCPRVRNTNQEDTDKDNVG 507
Q DNCP N Q+D DSDGVGD C DNCP + N Q DTD+D +G
Sbjct: 355 QGDNCPLTPNSGQEDTDSDGVGDACDDDDDNDGVRDIRDNCPLISNPEQMDTDQDTIG 412
Score = 45.6 bits (103), Expect = 5e-05
Identities = 30/96 (31%), Positives = 37/96 (38%), Gaps = 13/96 (13%)
Frame = +1
Query: 259 GNACDNCPRHYNPRQEXXXXXXXXXXXXXXXXXXXIPNQVDNCPRKYNPQQDDMDSDGVG 438
G+ CDNCP N + + + ++ DNC N Q D DSDG+G
Sbjct: 471 GDTCDNCPAVPNNQSDTNQNLIGDACEGVDSDHDGVIDRADNCVSVPNADQVDTDSDGIG 530
Query: 439 D-------------VCDNCPRVRNTNQEDTDKDNVG 507
D DNC V N Q D D D VG
Sbjct: 531 DACDSDTDGDGVSDGSDNCRLVPNQAQSDVDGDGVG 566
Score = 43.6 bits (98), Expect = 2e-04
Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 13/61 (21%)
Frame = +1
Query: 364 IPNQVDNCPRKYNPQQDDMDSDGVGDVC-------------DNCPRVRNTNQEDTDKDNV 504
I + DNCPR +N +Q D + DG GD C DNCP N Q D D+D
Sbjct: 411 IGDSCDNCPRVWNKRQRDANGDGRGDACTADPDDDGIEGSHDNCPMHYNPEQLDRDRDGF 470
Query: 505 G 507
G
Sbjct: 471 G 471
Score = 34.7 bits (76), Expect = 0.100
Identities = 18/53 (33%), Positives = 21/53 (39%)
Frame = +2
Query: 86 DNCPDVSNSGQEXXXXXXXXXXXXXXXXXXXIPNFPDNCPLTPNPDQLDDDEN 244
DNCP V N Q I DNCP+ NP+QLD D +
Sbjct: 416 DNCPRVWNKRQRDANGDGRGDACTADPDDDGIEGSHDNCPMHYNPEQLDRDRD 468
Score = 32.7 bits (71), Expect = 0.40
Identities = 23/75 (30%), Positives = 29/75 (38%)
Frame = +2
Query: 20 LDRDLDGHPDEQLPCNEPRCKKDNCPDVSNSGQEXXXXXXXXXXXXXXXXXXXIPNFPDN 199
LDRD DG D C DNCP V N+ + + + DN
Sbjct: 463 LDRDRDGFGDT--------C--DNCPAVPNNQSDTNQNLIGDACEGVDSDHDGVIDRADN 512
Query: 200 CPLTPNPDQLDDDEN 244
C PN DQ+D D +
Sbjct: 513 CVSVPNADQVDTDSD 527
Score = 32.7 bits (71), Expect = 0.40
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1
Query: 379 DNCPRKYNPQQDDMDSDGVGDVC 447
DNC N Q D+D DGVGD C
Sbjct: 547 DNCRLVPNQAQSDVDGDGVGDAC 569
Score = 30.3 bits (65), Expect = 2.1
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +3
Query: 564 NCPLIPNSDQQDVDRD 611
NCPL PNS Q+D D D
Sbjct: 358 NCPLTPNSGQEDTDSD 373
Score = 28.3 bits (60), Expect = 8.7
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 564 NCPLIPNSDQQDVDRD 611
NCPLI N +Q D D+D
Sbjct: 394 NCPLISNPEQMDTDQD 409
>SB_12801| Best HMM Match : TSP_3 (HMM E-Value=2.3e-39)
Length = 252
Score = 74.5 bits (175), Expect = 1e-13
Identities = 48/156 (30%), Positives = 58/156 (37%), Gaps = 1/156 (0%)
Frame = +1
Query: 202 PVDPQPGPVGRRRKQIGRRGNACDNCPRHYNPRQEXXXXXXXXXXXXXXXXXXXIPNQVD 381
P P P QIG +ACDNCP NP Q+ I N +D
Sbjct: 25 PRVPNPDQANSDSDQIG---DACDNCPTISNPDQKDTDGDGMGDLCDVDIDGDGIINVLD 81
Query: 382 NCPRKYNPQQDDMDSDGVGDVCDNCPRVRNTNQEDTDKDNVGARATAI*TVTKTGYKMXX 561
NCP N Q + D D +GD CDNC RN Q D D D +G + G
Sbjct: 82 NCPLVSNRDQKNTDGDPLGDACDNCINARNPTQADRDGDGIGDACDYNEDTDRDGIDDRH 141
Query: 562 XXXXXXXXXXXXXXXXXNKGDVCYDDERPE-IGDYR 666
+GD C DD+ + I DYR
Sbjct: 142 DNCPGKPNSAQLDTDGDGRGDACDDDDDNDGIPDYR 177
Score = 66.1 bits (154), Expect = 4e-11
Identities = 26/46 (56%), Positives = 32/46 (69%)
Frame = +1
Query: 370 NQVDNCPRKYNPQQDDMDSDGVGDVCDNCPRVRNTNQEDTDKDNVG 507
N DNCPR NP Q + DSD +GD CDNCP + N +Q+DTD D +G
Sbjct: 19 NDRDNCPRVPNPDQANSDSDQIGDACDNCPTISNPDQKDTDGDGMG 64
Score = 50.8 bits (116), Expect = 1e-06
Identities = 34/98 (34%), Positives = 42/98 (42%), Gaps = 15/98 (15%)
Frame = +1
Query: 259 GNACDNCPRHYNPRQ--EXXXXXXXXXXXXXXXXXXXIPNQVDNCPRKYNPQQ------- 411
G+ACDNC NP Q I ++ DNCP K N Q
Sbjct: 100 GDACDNCINARNPTQADRDGDGIGDACDYNEDTDRDGIDDRHDNCPGKPNSAQLDTDGDG 159
Query: 412 ------DDMDSDGVGDVCDNCPRVRNTNQEDTDKDNVG 507
DD D+DG+ D DNC V N++Q DTD D +G
Sbjct: 160 RGDACDDDDDNDGIPDYRDNCRLVPNSDQRDTDLDGIG 197
Score = 38.7 bits (86), Expect = 0.006
Identities = 19/53 (35%), Positives = 22/53 (41%)
Frame = +2
Query: 80 KKDNCPDVSNSGQEXXXXXXXXXXXXXXXXXXXIPNFPDNCPLTPNPDQLDDD 238
+ DNCP NS Q IP++ DNC L PN DQ D D
Sbjct: 140 RHDNCPGKPNSAQLDTDGDGRGDACDDDDDNDGIPDYRDNCRLVPNSDQRDTD 192
Score = 37.1 bits (82), Expect = 0.019
Identities = 20/59 (33%), Positives = 22/59 (37%)
Frame = +1
Query: 271 DNCPRHYNPRQEXXXXXXXXXXXXXXXXXXXIPNQVDNCPRKYNPQQDDMDSDGVGDVC 447
DNCP N Q IP+ DNC N Q D D DG+GD C
Sbjct: 142 DNCPGKPNSAQLDTDGDGRGDACDDDDDNDGIPDYRDNCRLVPNSDQRDTDLDGIGDAC 200
Score = 35.5 bits (78), Expect = 0.057
Identities = 18/51 (35%), Positives = 21/51 (41%)
Frame = +2
Query: 86 DNCPDVSNSGQEXXXXXXXXXXXXXXXXXXXIPNFPDNCPLTPNPDQLDDD 238
DNCP +SN Q+ I N DNCPL N DQ + D
Sbjct: 45 DNCPTISNPDQKDTDGDGMGDLCDVDIDGDGIINVLDNCPLVSNRDQKNTD 95
Score = 30.7 bits (66), Expect = 1.6
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 185 NFPDNCPLTPNPDQLDDDENK 247
N DNCP PNPDQ + D ++
Sbjct: 19 NDRDNCPRVPNPDQANSDSDQ 39
Score = 30.3 bits (65), Expect = 2.1
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3
Query: 564 NCPLIPNSDQQDVDRD 611
NC L+PNSDQ+D D D
Sbjct: 179 NCRLVPNSDQRDTDLD 194
>SB_6443| Best HMM Match : TSP_C (HMM E-Value=0)
Length = 521
Score = 67.7 bits (158), Expect = 1e-11
Identities = 34/83 (40%), Positives = 37/83 (44%)
Frame = +1
Query: 259 GNACDNCPRHYNPRQEXXXXXXXXXXXXXXXXXXXIPNQVDNCPRKYNPQQDDMDSDGVG 438
G+ACDNCP H N Q I N DNCP N Q D D D +G
Sbjct: 69 GDACDNCPYHSNLWQGDIDEDGIGDKCDHDKDGDGIHNDHDNCPTIPNMGQTDTDGDKIG 128
Query: 439 DVCDNCPRVRNTNQEDTDKDNVG 507
D CDNCP N Q D D D +G
Sbjct: 129 DKCDNCPNTPNKGQGDKDYDLLG 151
Score = 53.6 bits (123), Expect = 2e-07
Identities = 23/46 (50%), Positives = 28/46 (60%)
Frame = +1
Query: 370 NQVDNCPRKYNPQQDDMDSDGVGDVCDNCPRVRNTNQEDTDKDNVG 507
+ VDNC NP Q D D+D +GD CDNCP N Q D D+D +G
Sbjct: 47 DSVDNCVLIPNPAQYDYDADTIGDACDNCPYHSNLWQGDIDEDGIG 92
Score = 47.6 bits (108), Expect = 1e-05
Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 13/61 (21%)
Frame = +1
Query: 364 IPNQVDNCPRKYNPQQDDMDSDGVGDVC-------------DNCPRVRNTNQEDTDKDNV 504
I + DNCP N Q D+D DG+GD C DNCP + N Q DTD D +
Sbjct: 68 IGDACDNCPYHSNLWQGDIDEDGIGDKCDHDKDGDGIHNDHDNCPTIPNMGQTDTDGDKI 127
Query: 505 G 507
G
Sbjct: 128 G 128
Score = 38.3 bits (85), Expect = 0.008
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = +1
Query: 364 IPNQVDNCPRKYNPQQDDMDSDGVGDVC 447
IP+ VDNC NP Q D+D DG GD C
Sbjct: 238 IPDDVDNCRLVPNPTQRDLDGDGRGDEC 265
Score = 37.9 bits (84), Expect = 0.011
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 394 KY-NPQQDDMDSDGVGDVCDNCPRVRNTNQEDTDKDNVG 507
KY +P DD D+DG+ D DNC V N Q D D D G
Sbjct: 224 KYGDPCDDDDDNDGIPDDVDNCRLVPNPTQRDLDGDGRG 262
Score = 35.5 bits (78), Expect = 0.057
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Frame = +1
Query: 259 GNACDNCPRHYNPRQ--EXXXXXXXXXXXXXXXXXXXIPNQVDNCPRKYNPQQDDMDSDG 432
G+ CDNCP N Q + + + +DNC NP Q D D DG
Sbjct: 128 GDKCDNCPNTPNKGQGDKDYDLLGDECDTNLDNDRDGVDDSIDNCLGLSNPDQIDNDGDG 187
Query: 433 VGDVCD 450
G V +
Sbjct: 188 KGTVSE 193
Score = 32.7 bits (71), Expect = 0.40
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 364 IPNQVDNCPRKYNPQQDDMDSDGVGDVCD 450
I ++ DNCP N Q D D D +GD CD
Sbjct: 127 IGDKCDNCPNTPNKGQGDKDYDLLGDECD 155
Score = 32.7 bits (71), Expect = 0.40
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +1
Query: 415 DMDSDGVGDVCDNCPRVRNTNQEDTDKDNVG 507
D D DGV D DNC + N +Q D D D G
Sbjct: 159 DNDRDGVDDSIDNCLGLSNPDQIDNDGDGKG 189
Score = 32.3 bits (70), Expect = 0.53
Identities = 19/54 (35%), Positives = 20/54 (37%)
Frame = +2
Query: 86 DNCPDVSNSGQEXXXXXXXXXXXXXXXXXXXIPNFPDNCPLTPNPDQLDDDENK 247
DNCP SN Q I N DNCP PN Q D D +K
Sbjct: 73 DNCPYHSNLWQGDIDEDGIGDKCDHDKDGDGIHNDHDNCPTIPNMGQTDTDGDK 126
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = +2
Query: 80 KKDNCPDVSNSGQ--EXXXXXXXXXXXXXXXXXXXIPNFPDNCPLTPNPDQLDDD 238
K DNCP+ N GQ + + + DNC NPDQ+D+D
Sbjct: 130 KCDNCPNTPNKGQGDKDYDLLGDECDTNLDNDRDGVDDSIDNCLGLSNPDQIDND 184
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +2
Query: 179 IPNFPDNCPLTPNPDQLD-DDENKSD 253
IP+ DNC L PNP Q D D + + D
Sbjct: 238 IPDDVDNCRLVPNPTQRDLDGDGRGD 263
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +1
Query: 412 DDMDSDGVG-DVCDNCPRVRNTNQEDTDKDNVG 507
DD D D D DNC + N Q D D D +G
Sbjct: 37 DDADDDDENVDSVDNCVLIPNPAQYDYDADTIG 69
>SB_22603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 56.8 bits (131), Expect = 2e-08
Identities = 21/36 (58%), Positives = 27/36 (75%)
Frame = +1
Query: 364 IPNQVDNCPRKYNPQQDDMDSDGVGDVCDNCPRVRN 471
I + +DNCP +NP Q+D+D+DGVGDVCDNC N
Sbjct: 314 IVDSIDNCPYTFNPLQEDIDNDGVGDVCDNCKTTAN 349
Score = 39.5 bits (88), Expect = 0.004
Identities = 17/31 (54%), Positives = 18/31 (58%)
Frame = +1
Query: 415 DMDSDGVGDVCDNCPRVRNTNQEDTDKDNVG 507
D D DG+ D DNCP N QED D D VG
Sbjct: 308 DSDGDGIVDSIDNCPYTFNPLQEDIDNDGVG 338
>SB_26267| Best HMM Match : TSP_C (HMM E-Value=0)
Length = 2996
Score = 50.4 bits (115), Expect = 2e-06
Identities = 21/40 (52%), Positives = 24/40 (60%)
Frame = +2
Query: 2 NGTVCGLDRDLDGHPDEQLPCNEPRCKKDNCPDVSNSGQE 121
NG C D+D D PD L C C+KDNCP V N+GQE
Sbjct: 1804 NGEECNPDQDFDAIPDVGLSCTLSNCRKDNCPVVPNTGQE 1843
Score = 46.0 bits (104), Expect = 4e-05
Identities = 19/33 (57%), Positives = 21/33 (63%)
Frame = +1
Query: 409 QDDMDSDGVGDVCDNCPRVRNTNQEDTDKDNVG 507
Q D D DGVGD CDNC N +Q+DTD D G
Sbjct: 1907 QQDTDGDGVGDACDNCVNDPNPDQKDTDGDGQG 1939
Score = 42.7 bits (96), Expect = 4e-04
Identities = 20/40 (50%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 364 IPNQVDNCP-RKYNPQQDDMDSDGVGDVCDNCPRVRNTNQ 480
I + +D C K Q+D DSDGVGD CDNC N NQ
Sbjct: 2046 ISDTMDKCKFLKAANDQNDTDSDGVGDPCDNCKNTANANQ 2085
Score = 37.5 bits (83), Expect = 0.014
Identities = 19/43 (44%), Positives = 21/43 (48%)
Frame = +1
Query: 379 DNCPRKYNPQQDDMDSDGVGDVCDNCPRVRNTNQEDTDKDNVG 507
DNC NP Q D D DG G+ CDN + DTD D G
Sbjct: 1920 DNCVNDPNPDQKDTDGDGQGNACDN-DSDGDGGACDTDSDGDG 1961
Score = 34.7 bits (76), Expect = 0.100
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 415 DMDSDGVGDVCDNCPRVRNTN-QEDTDKDNVG 507
D D DG+ D D C ++ N Q DTD D VG
Sbjct: 2040 DSDGDGISDTMDKCKFLKAANDQNDTDSDGVG 2071
Score = 33.5 bits (73), Expect = 0.23
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = +1
Query: 379 DNCPRKYNPQQDDMDSDGVGDVCD 450
DNCP N Q+D DSD GD CD
Sbjct: 1832 DNCPVVPNTGQEDNDSDTEGDACD 1855
Score = 33.1 bits (72), Expect = 0.30
Identities = 20/43 (46%), Positives = 20/43 (46%), Gaps = 7/43 (16%)
Frame = +1
Query: 400 NPQQDDMDSDGVGDVC-------DNCPRVRNTNQEDTDKDNVG 507
NP QD VG C DNCP V NT QED D D G
Sbjct: 1809 NPDQDFDAIPDVGLSCTLSNCRKDNCPVVPNTGQEDNDSDTEG 1851
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 412 DDMDSDGVGDVCDNCPRVRNTNQE 483
DD D DGV ++ DNC V N QE
Sbjct: 2155 DDADGDGVPNLTDNCILVSNPAQE 2178
Score = 28.7 bits (61), Expect = 6.6
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +3
Query: 564 NCPLIPNSDQQDVDRDEQ 617
NCP++PN+ Q+D D D +
Sbjct: 1833 NCPVVPNTGQEDNDSDTE 1850
>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3287
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 370 NQVDNCPRKYNPQQDDMDSDGVGDVCDNCPRVRNTNQEDTDKDN 501
N DN N +D D+D D+ DN + N N D D DN
Sbjct: 3216 NDNDNDNDNDNDNDNDNDNDNDNDI-DNDNDIDNDNDNDNDNDN 3258
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +1
Query: 370 NQVDNCPRKYNPQQDDMDSDGVGDVC-DNCPRVRNTNQEDTDKDN 501
N DN N +D D+D D+ DN + N N D D DN
Sbjct: 3176 NDNDNDNDNDNDNDNDNDNDNDNDIDNDNDNDIDNDNDNDNDNDN 3220
>SB_46775| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-27)
Length = 317
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = -1
Query: 554 ILYPVLVTVYIAVARAPTLSLSVSSWFVLRTRGQLSQTSPTPSESMSSCCGLYFLGQL 381
ILY ++ + + T SV +WF+ T P S+ MS GL F+ L
Sbjct: 193 ILYLLIASFFSCTRENWTFLQSVYAWFITLTTVGFGDLIPATSDVMSLLLGLCFMSAL 250
>SB_31478| Best HMM Match : Extensin_2 (HMM E-Value=1.3)
Length = 515
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 726 WIIDGPFGRPPCYKLTIDRP 785
W DGPFGRPP + DRP
Sbjct: 352 WSNDGPFGRPPDDRGPQDRP 371
>SB_44890| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1109
Score = 29.1 bits (62), Expect = 5.0
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +1
Query: 391 RKYNPQQDDMDSDGVGDVCDNCPRVRNTNQEDTDK 495
++Y ++DD DSD +G C++ R +++ ++ K
Sbjct: 654 KEYEEEEDDTDSDSLGVSCNSMGNSRKSSRSNSPK 688
>SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1186
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 744 FGRP-PCYKLTIDRPNPGFIQTELGTKLPRNKFPR 845
FGRP P L + RPNPG + LG P F R
Sbjct: 424 FGRPNPGPNLGLGRPNPGLERPNLGLWRPNPGFGR 458
>SB_7560| Best HMM Match : Metallothio_PEC (HMM E-Value=1.3)
Length = 350
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Frame = -2
Query: 403 DCTSWGSCPLGSVCRHRPCPNHRRLPFRLHR--CPPGEGC 290
D TS G CP G CR R P + CPPG C
Sbjct: 246 DETSAGGCPPGFWCRKRTAPEEQTPNEDTFNWGCPPGFWC 285
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,186,602
Number of Sequences: 59808
Number of extensions: 469690
Number of successful extensions: 1762
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1718
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2503194881
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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