Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30075
(789 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 38 0.007
SB_8898| Best HMM Match : WSC (HMM E-Value=6.4) 33 0.20
SB_29898| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.0085) 32 0.46
SB_621| Best HMM Match : SNF2_N (HMM E-Value=0) 31 0.80
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011) 31 1.4
SB_20262| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9) 29 3.2
SB_54912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_56922| Best HMM Match : HLH (HMM E-Value=1.9e-21) 29 5.7
SB_1687| Best HMM Match : LRR_2 (HMM E-Value=4.6e-07) 29 5.7
SB_23569| Best HMM Match : PAN (HMM E-Value=0.0015) 28 7.5
SB_52452| Best HMM Match : Borrelia_orfA (HMM E-Value=1.3) 28 7.5
SB_47179| Best HMM Match : Carboxyl_trans (HMM E-Value=0) 28 7.5
SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3) 28 7.5
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 38.3 bits (85), Expect = 0.007
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Frame = -1
Query: 174 HDWCCNSFHRY--YNEYHYCMMNSLRHHHGLHC----FHNCL-DCYCLYKN 43
H +CC HRY Y +HYC RHH+ C +H C YC Y++
Sbjct: 20 HHYCCYCHHRYCYYRHHHYCWY---RHHYHYPCYRHYYHRCYRHHYCCYRH 67
>SB_8898| Best HMM Match : WSC (HMM E-Value=6.4)
Length = 165
Score = 33.5 bits (73), Expect = 0.20
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Frame = -1
Query: 156 SFHRYYNEYHYC-MMNSLRH--HHGLHCFHNCLDC-----YCLYKNLCI-RYLYHH 16
S HR Y YC ++H H+ HC+ C C +C Y+ C+ RY Y+H
Sbjct: 32 SCHRVCRRYRYCKSFLFIKHKCHYKYHCYLKC-SCKVKYYHCRYRRRCVWRYKYYH 86
>SB_29898| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.0085)
Length = 350
Score = 32.3 bits (70), Expect = 0.46
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
Frame = -1
Query: 150 HRYYNEYHYCMMNSLRH--HHGLHCFHNCLDC-----YCLYKNLCI-RYLYHH 16
HR Y YC +H ++ HC+ C C +C Y+ C+ RY Y+H
Sbjct: 98 HRVCRRYRYCKSYFGKHKCYYKYHCYLKCF-CKVKYYHCRYRRRCVWRYKYYH 149
>SB_621| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 1432
Score = 31.5 bits (68), Expect = 0.80
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 153 RSYNTSRDRVDESYKKTYRNESSVNYSNREYGGREDHQKEK 275
RSY+ D + SY+K+YR E ++ +REY H K
Sbjct: 1352 RSYDRGTDHLPRSYEKSYRRED--HHRSREYSSDHRHPSFK 1390
>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
Length = 972
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = -1
Query: 177 CHDWCCNSFHRYYNEYHYCMMNSLRHHHGLHCFHNCLDCYCLYKNLCIRYLYHHCSS 7
C+ +C ++ Y Y+YC ++ +C++ C CYC Y Y+ C S
Sbjct: 470 CYCYCYCYYYCYCYCYYYCY-----YYCYCYCYYCCYYCYCYYYYHHYYCCYYCCCS 521
>SB_20262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = +3
Query: 123 NNDTRYNSGGRSYNTSRDRVDESYKKTYRNESSVNYSNREYGGREDHQKEKE 278
NND N+G N + D D + N+++ NY N + G D+ +
Sbjct: 60 NNDNYDNNGNNDSNDNNDNNDNN-DNNDNNDNNDNYDNNDNNGNNDNNDNND 110
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +3
Query: 123 NNDTRYNSGGRSYNTSRDRVDESYK--KTYRNESSVNYSNREYGGREDH 263
NND N+G N + D D +Y N+++ NY N + D+
Sbjct: 111 NNDNNDNNGNNDNNDNNDNYDNNYNNDNNDNNDNNDNYDNYDDNDNNDN 159
>SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9)
Length = 138
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -1
Query: 177 CHDWCCNSFHRYYNEYHYCMMNSLRHHHGLHCFHN 73
C+ N HRY++ +H+ + HHH H H+
Sbjct: 34 CYHKLKNPRHRYHHHHHHQHNHHQHHHHHNHHHHH 68
>SB_54912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 29.1 bits (62), Expect = 4.3
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
Frame = -1
Query: 258 PLYLHTLCLNS*QSFHFDMFFCKIHLLCHDWCCNSF-HRYYNEYHYCMMNSLRHHHGLHC 82
P Y ++LC S + F L + NS + + EY Y + H +
Sbjct: 60 PHYPNSLCTCLLASMRYSAFHMTTQLTLSPYYHNSLQYLFVGEYKYLFVPHHDPTHPIPH 119
Query: 81 FHNCLDCYCLYKNLCIRYLYHHCSS 7
+ N L C CL + IRY H ++
Sbjct: 120 YPNSLPCTCLLAS--IRYSAFHITT 142
>SB_56922| Best HMM Match : HLH (HMM E-Value=1.9e-21)
Length = 157
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 527 IAGTPRSRASFTRRFADRTLNYNRVFRSVKGRIPSNPKKKHLN 655
+A TP+ R + R+ RT N F ++ IP+ P L+
Sbjct: 26 LADTPKKRYTANRKERKRTQTMNTAFEDLRNHIPNVPPDTKLS 68
>SB_1687| Best HMM Match : LRR_2 (HMM E-Value=4.6e-07)
Length = 483
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = -1
Query: 66 DCYCLYKNLCIRYL-YHHCSSLV 1
DC KNLC++YL HC+ LV
Sbjct: 216 DCIHTLKNLCLKYLNVSHCTKLV 238
>SB_23569| Best HMM Match : PAN (HMM E-Value=0.0015)
Length = 504
Score = 28.3 bits (60), Expect = 7.5
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = +3
Query: 123 NNDTRYNSGGRSYNTSRDRVDESYKKTYRNESSVNYSN 236
NN+ N+ +YN + + + TY N ++ Y+N
Sbjct: 443 NNNNNNNNNNNTYNNNNSSNNNNNNNTYNNNNNNTYNN 480
>SB_52452| Best HMM Match : Borrelia_orfA (HMM E-Value=1.3)
Length = 471
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +3
Query: 126 NDTRYNSGGRSYNTSRDRVDESYKKTYRNESSVNYSNREYGGREDHQKEKE 278
N T+ SG + N R + E NESS+ + E E+H KE
Sbjct: 250 NTTKQESGCKPKNKKRKKKKEKKTNETDNESSIKKKSCEDSEDEEHLPSKE 300
>SB_47179| Best HMM Match : Carboxyl_trans (HMM E-Value=0)
Length = 622
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 276 LFLSGDPLYLHTLCLNS*QSF 214
+FL G PL+L TLC N+ +F
Sbjct: 75 IFLGGPPLHLSTLCANNTSTF 95
>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
Length = 509
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/39 (33%), Positives = 15/39 (38%)
Frame = -1
Query: 186 HLLCHDWCCNSFHRYYNEYHYCMMNSLRHHHGLHCFHNC 70
HL CH + HR HY HHH H+C
Sbjct: 368 HLYCHRPRLSYHHRPSRHLHYHRFRLSIHHHPSSRHHHC 406
>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 736
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -1
Query: 177 CHDWCCNSFHRY-YNEYHYCMMNSLRHHHGLHCFHN 73
C+ N HRY ++ +H+ N +HHH H H+
Sbjct: 246 CYHKLKNPRHRYHHHHHHHHQHNHHQHHHHHHHHHH 281
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,417,984
Number of Sequences: 59808
Number of extensions: 335440
Number of successful extensions: 1095
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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