Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30068
         (572 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59492| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_12330| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_17027| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_8644| Best HMM Match : 7tm_1 (HMM E-Value=0)                        28   4.7  
SB_35326| Best HMM Match : IPK (HMM E-Value=0)                         28   4.7  

>SB_59492| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -3

Query: 525 H*HLTHHKSCGREVQQAFTDDIHNFHWYRE-H*TTLKRILSSIWPRVAAG 379
           H H       G+  +Q       N +   E H  T+K +++ IWP+VAAG
Sbjct: 8   HQHAVRQSDRGQAPRQWAGLKFFNVYGPNEGHKGTMKSVVAQIWPKVAAG 57


>SB_12330| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 466

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 105 GVDRLAGFRLLASHTGIRHRQVQEE-LLADGERVQPRPAQHVPAAHESR 248
           G D+L G R  ++    R RQV EE LL       P P  H P++  +R
Sbjct: 374 GHDKLLGLRARSTAEKDRLRQVHEEKLLMQAGYNNPAPVLHPPSSFAAR 422


>SB_17027| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 297

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 77  ARARPWPSVRRGSTRRFSASREPY 148
           A   PWP + RG   RFS  R  Y
Sbjct: 31  ASRAPWPEIHRGFPSRFSKERHGY 54


>SB_8644| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 1011

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +2

Query: 230 RGPRVPPPDGPISEGDARSGRRGHGPCQGQRALVRSED 343
           +G + PPP  P+ EGD         PC      VRS D
Sbjct: 463 KGSKAPPPP-PLKEGDTSPDECSSSPCFNGGTCVRSCD 499


>SB_35326| Best HMM Match : IPK (HMM E-Value=0)
          Length = 598

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = +3

Query: 15  RNLGYTKV-MSVVERVEYRYG--RPGPDRGQAFGVDRL 119
           +NL +TKV + +++     +G  R GPD+G  FG++ L
Sbjct: 543 KNLRHTKVDVRMIDFAHTTWGNTRSGPDKGYLFGIENL 580


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,669,884
Number of Sequences: 59808
Number of extensions: 346005
Number of successful extensions: 1143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)