Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20035
         (493 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4350| Best HMM Match : L15 (HMM E-Value=3.9e-10)                    62   2e-10
SB_3035| Best HMM Match : PAN (HMM E-Value=2.9e-08)                    32   0.30 
SB_53807| Best HMM Match : MCM (HMM E-Value=0)                         27   6.4  
SB_22488| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_26471| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  

>SB_4350| Best HMM Match : L15 (HMM E-Value=3.9e-10)
          Length = 173

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 35/77 (45%), Positives = 39/77 (50%)
 Frame = +3

Query: 234 SFELR*AWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPVIVXXXXXXX 413
           S  L   W+LVSEQTR  Y +  DG VPVI++VKA           PKQPVIV       
Sbjct: 97  SINLDKVWSLVSEQTRQNYKNKKDGPVPVIDVVKAGYYKVLGKGLLPKQPVIVKAKFFSR 156

Query: 414 XXXXXXXDVGGACVLSA 464
                   VGGACVL A
Sbjct: 157 RAEDKIKAVGGACVLMA 173



 Score = 47.2 bits (107), Expect = 7e-06
 Identities = 19/37 (51%), Positives = 26/37 (70%)
 Frame = +1

Query: 145 RINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKL 255
           R + +  HPGYFGK+GMR+FH  +N    P +NLDK+
Sbjct: 67  RGSYEAIHPGYFGKVGMRHFHLTRNAYHKPSINLDKV 103


>SB_3035| Best HMM Match : PAN (HMM E-Value=2.9e-08)
          Length = 240

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 229 RNSCSF*SGNFSYQVCQSIQDGTCPC*FCDGAHHQHYHDLLDAYGA 92
           R+SC   +  F   +C+S    T PC   D  H +H  DL+D  GA
Sbjct: 52  RSSCQ--ARCFMNNLCRSYNYNTTPCQLSDSDHLEHPSDLVDKPGA 95


>SB_53807| Best HMM Match : MCM (HMM E-Value=0)
          Length = 789

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -1

Query: 280 LVCSETNVQAYLSS-KLDRNSCSF*SGNFSYQVCQSIQDGTCP 155
           +V S T +   LS  K D   CSF  G F     Q ++ G+CP
Sbjct: 233 VVTSSTGIMPQLSVIKYDCPKCSFILGPFFQGSDQEVKPGSCP 275


>SB_22488| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 354

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 484 ILLLIIYADSTQAPPTSLIFFSADFEKNF 398
           I L+  YA+S    P    FFSADF+K F
Sbjct: 291 ICLMFTYANSV-CNPVIYAFFSADFKKGF 318


>SB_26471| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 566

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +3

Query: 153 HGQVPSWILWQTWY 194
           +G+  SW++W+TW+
Sbjct: 342 YGEFSSWLVWRTWF 355


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,360,339
Number of Sequences: 59808
Number of extensions: 284340
Number of successful extensions: 664
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)