Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20027
(779 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29636| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.028
SB_29357| Best HMM Match : LRR_1 (HMM E-Value=0.00026) 34 0.15
SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.60
SB_43512| Best HMM Match : RNA_pol_delta (HMM E-Value=4.7) 31 0.79
SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98) 31 0.79
SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32) 31 1.0
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48) 31 1.4
SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) 29 3.2
SB_34673| Best HMM Match : UK (HMM E-Value=0.6) 29 3.2
SB_40725| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_19618| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_42880| Best HMM Match : Laminin_II (HMM E-Value=2.1) 29 5.6
SB_38815| Best HMM Match : Laminin_II (HMM E-Value=1.3) 29 5.6
SB_24403| Best HMM Match : BRF1 (HMM E-Value=1.2) 29 5.6
SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 28 7.4
SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41) 28 7.4
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_47219| Best HMM Match : DUF414 (HMM E-Value=1.7) 28 7.4
SB_32968| Best HMM Match : SRP40_C (HMM E-Value=0.013) 28 7.4
SB_20304| Best HMM Match : Vicilin_N (HMM E-Value=4.6) 28 7.4
>SB_29636| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 306
Score = 36.3 bits (80), Expect = 0.028
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 9/89 (10%)
Frame = +2
Query: 512 EISKEE--KPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAIP-------EIKTPEA 664
E S+EE KPS D A P K+ + E+ P E++ P+
Sbjct: 196 EASEEEEGKPSLEDGTEDTPEANKTPEEPKEDEKVTEEETPKEETPKVEDAPEEVEAPKE 255
Query: 665 ADAPKLADNPVDEDKPADISPDAPKAEAK 751
++PK D P +ED P + D PK EAK
Sbjct: 256 EESPKEEDTPKEEDAPKE---DTPKEEAK 281
>SB_29357| Best HMM Match : LRR_1 (HMM E-Value=0.00026)
Length = 521
Score = 33.9 bits (74), Expect = 0.15
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 662 AADAPKLADNPVDEDKPADISPDAPKAEAKSADD 763
A D+ K + P DED+P D+ P P +++K ADD
Sbjct: 425 AVDSAKKEEPPKDEDQPGDVEP--PISDSKDADD 456
>SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1143
Score = 31.9 bits (69), Expect = 0.60
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Frame = +3
Query: 435 KSADIKVEEPAAQPEDSKTEVQ---ATVLKFQKKKNLVLLMQKVLPTQLPSFPTW 590
++ DI VE PA+ +KTE + A + KF++ + L+ +VL + P+ PT+
Sbjct: 781 RNEDIVVEVPASNEPAAKTEDEIRKAEMCKFEQAQEAEDLISEVLKSYAPTLPTY 835
>SB_43512| Best HMM Match : RNA_pol_delta (HMM E-Value=4.7)
Length = 241
Score = 31.5 bits (68), Expect = 0.79
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 548 AEGSADSAAIIPNMVKKIDLAPTVES-DAAAIPEIKTPEAADAPKLADNPVDEDKPADIS 724
AE S + A+ P + +P E+ D PE K A APK D P E
Sbjct: 30 AEASDATEAVAP----EAPASPESENTDDFKEPEAKEETPAAAPKAEDTPALETSGESKL 85
Query: 725 PDAPKAEAKSADD 763
PD P + +S DD
Sbjct: 86 PDTPVEDEESEDD 98
>SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98)
Length = 242
Score = 31.5 bits (68), Expect = 0.79
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 414 EIPDAEAKSADIKVEEPAAQPEDSKTEVQATV 509
E P EA+S D KVE P + E + EV+ATV
Sbjct: 22 ETPIEEAESPDKKVEAPIEEAEAPEEEVEATV 53
>SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32)
Length = 1074
Score = 31.1 bits (67), Expect = 1.0
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Frame = +2
Query: 509 AEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAIPEIKTPEA--ADAPKL 682
A + +P A G D+ P K D A E +A+ EA +A K
Sbjct: 107 ATADNKAEPKKEQASGIKDAPEATPK--KGADKATPKEVEASGDEVASEAEAKPVEAAKT 164
Query: 683 ADNPVDEDKPADISPDAPKAEAK 751
NP EDKPA+ + + AK
Sbjct: 165 ESNPAKEDKPAEKAKEDKAGPAK 187
>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
Length = 341
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +2
Query: 539 ATDAEGSAD-SAAIIPNMVKKIDLAPTVESDAAAIPEIKTPEAADAPKLADNPVDEDKPA 715
A D SA+ +I P++ + +DL +E D +P+I T A P P D PA
Sbjct: 246 ADDLAYSAELGPSIAPSVPQGLDLPDVLEHDIPEVPDIVTGGGAPVP--PPPPADGSAPA 303
Query: 716 DISPDAP 736
P P
Sbjct: 304 PPPPPPP 310
>SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1207
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 584 NMVKKIDLAPTVESDAAAIPEIKTPEAADAPKLADNPVDEDKPADISPDA 733
N V DL T+ ++ + +P E D P +D P P D+SP++
Sbjct: 909 NKVTNSDL--TINTNQSTLPREPVNEGYDNPTFSDYPDGSPSPKDVSPES 956
>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
Length = 5087
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +2
Query: 494 STSYRAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPT 616
+TS AE+ +E KP+A D + SA S ++ I+++PT
Sbjct: 1142 ATSLEAEVFEEYKPTAKDVKESASSTV---HLAADIEISPT 1179
>SB_34673| Best HMM Match : UK (HMM E-Value=0.6)
Length = 641
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +2
Query: 542 TDAEGSADSAAIIPNMVKKIDLAPTVESDAAAIPEI--KTPEAADAPKLADNPVDEDKPA 715
TD + P+ ++ + AP P+ KT + D P A + D + A
Sbjct: 249 TDVPDRSQEVTNTPDRPQEANDAPDRPEKTIDAPDRSQKTTDTPDRPHEATDEPDRSQEA 308
Query: 716 DISPDAPKAEA 748
D +PD P+ EA
Sbjct: 309 DDTPDRPQKEA 319
>SB_40725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +2
Query: 578 IPNMVKKIDLAPTVESDA-AAIPEIKTPEAADAPKLADNPVDEDKPADI 721
+P VK++ P + + +K P A AP P D DKPA +
Sbjct: 338 VPEPVKEVPARPVTKQEPFKQTKPVKEPSLAPAPTANMVPSDRDKPAGL 386
>SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1271
Score = 29.1 bits (62), Expect = 4.2
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Frame = +2
Query: 545 DAEGSADSAAIIPNMVKKIDLAPTVESDAAAIPEIKTPEAADAPKLADNPVDEDKPADIS 724
DA G + +P I A ++ D A I + + APKL DN E + ++
Sbjct: 310 DATGESGDEDFLPG---SIGGATNLQQDEAKAQTISSGSGSAAPKLTDNAAKEVQQTPVA 366
Query: 725 PDA---PKAEAKSADDL 766
A KA K+A D+
Sbjct: 367 QAAEVVAKAPVKAAKDV 383
>SB_19618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 530
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +2
Query: 623 SDAAAIPEIKTPEAADAPKLADNPVDEDKPADISPDAPKAEAKSADDLRL 772
S ++ + + + E D P + D +ED+ + P+ P E AD L L
Sbjct: 362 STSSEMSDFEDEEGVDEPVMDDENEEEDQDDEKPPENPLTEEMLADSLSL 411
>SB_42880| Best HMM Match : Laminin_II (HMM E-Value=2.1)
Length = 647
Score = 28.7 bits (61), Expect = 5.6
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +2
Query: 494 STSYRAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLA-PTVESDAAAIPEIKTPEAAD 670
S SYR SK + ++ A+ AD +A I + + A P+ + + TP+A +
Sbjct: 3 SKSYRTR-SKSKSQTSNVAQEIADRSAQIEELQMSLPSASPSHAGAQQRVAPLLTPQAIE 61
Query: 671 APKLA 685
AP LA
Sbjct: 62 APSLA 66
>SB_38815| Best HMM Match : Laminin_II (HMM E-Value=1.3)
Length = 303
Score = 28.7 bits (61), Expect = 5.6
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +2
Query: 494 STSYRAEISKEEKPSATDAEGSADSAAIIPNMVKKI-DLAPTVESDAAAIPEIKTPEAAD 670
S SYR SK + ++ A+ AD +A I + + ++P+ + + TP+A +
Sbjct: 3 SKSYRTR-SKSKSQTSNVAQEIADLSAQIEELQMSLPSVSPSHAGAQQRVAPLLTPQAIE 61
Query: 671 APKLA 685
AP LA
Sbjct: 62 APSLA 66
>SB_24403| Best HMM Match : BRF1 (HMM E-Value=1.2)
Length = 623
Score = 28.7 bits (61), Expect = 5.6
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +2
Query: 527 EKPSATDAEGSADSAAIIPNMVKKIDLAPT--VESDAAAIPEIKTPEAADAPKLADNPVD 700
E S ++E S +++A K T +SD + EI + + D+ K++ NP D
Sbjct: 130 EVASEENSEKSIETSAASETATKSPSTENTGSTKSDKDDVVEISSDD--DSDKISANPTD 187
Query: 701 EDKPADISPDAPKAE 745
+P D++ P ++
Sbjct: 188 VQEPMDLTAPKPDSD 202
>SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1256
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 608 APTVESDAAAIPEIKTPEAADAPKLADNPVDEDKPADISPDA 733
AP + D+ A P PE A+ DNP + +KP ++S ++
Sbjct: 1211 APASQEDSQAQPTETKPEGAE-----DNPENAEKPGEVSKES 1247
>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 6725
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -1
Query: 341 VFWGYIVLFGLWYSGYLVVTNWS-RFGFLLSVAAATSVGLTESSILGA 201
V W + F W+ VT+ FGF +S A+A S+G + + GA
Sbjct: 564 VDWAQVQAFSKWFISQSAVTDQGVHFGF-ISYASAASIGFSFDADTGA 610
>SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)
Length = 638
Score = 28.3 bits (60), Expect = 7.4
Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Frame = +2
Query: 518 SKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESD--AAAIPEIKTPEAADAPKLADN 691
SKE+KP A + + A +P++ P + SD P+ + P AP L
Sbjct: 418 SKEKKPPAPLPKAHNEKIAPLPSLRASAATLPPLPSDEPPPLPPDEEKPPPPPAPALPPL 477
Query: 692 PVDEDKPADISPDAPKAEAK 751
P+ + P P K
Sbjct: 478 PLPPELPGSPGDSPPATSPK 497
>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1438
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +3
Query: 408 SSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATV 509
++E+P +A ++ + E PAA+PE + E +A V
Sbjct: 587 TAEVPIEDADTSTEEAESPAAEPEVAVKEAEAPV 620
>SB_47219| Best HMM Match : DUF414 (HMM E-Value=1.7)
Length = 704
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Frame = +2
Query: 602 DLAPTVESDAAAIPEIKTPEAADAPKLADNPVD---EDKPADISPDAPKAEAKS 754
D + A P++KT AD P A P D +++P D + K KS
Sbjct: 610 DRKKQTDETAVESPDVKTASEADQPVEAKKPADKSAKEEPKDAKAEDSKESLKS 663
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 647 IKTPEAADAPKLADNPVDEDKPADISPDAPKAEAKSAD 760
+++P+ A + AD PV+ KPAD S +AK+ D
Sbjct: 620 VESPDVKTASE-ADQPVEAKKPADKSAKEEPKDAKAED 656
>SB_32968| Best HMM Match : SRP40_C (HMM E-Value=0.013)
Length = 440
Score = 28.3 bits (60), Expect = 7.4
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +2
Query: 536 SATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAIPEIKTPEAADAPKLA--DNPVDEDK 709
S++D + S+D + KK + E D+++ E P+ DA K A D+ D+D
Sbjct: 66 SSSDDDSSSDEEVKVKKDTKKATKGSSSEDDSSSDEEEVKPKK-DAKKAATEDSSSDDDS 124
Query: 710 PADISPDAPKAEAK 751
+ + PK + +
Sbjct: 125 SGEDEDEKPKKKVE 138
>SB_20304| Best HMM Match : Vicilin_N (HMM E-Value=4.6)
Length = 261
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = +2
Query: 614 TVESDAAAIPEIKTPEAADAPKLADNPVDEDKPADISPDAPKAEAK 751
T ++A PE PE K D P EDKP D D P+ E K
Sbjct: 92 TTRNNADEKPE-DNPEDTPEDKTEDRP--EDKPEDKQQDKPEPEKK 134
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,074,542
Number of Sequences: 59808
Number of extensions: 360298
Number of successful extensions: 1542
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1534
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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