Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00027
         (778 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36468| Best HMM Match : DUF1643 (HMM E-Value=4.1)                   29   5.5  
SB_25436| Best HMM Match : 7tm_1 (HMM E-Value=9.49996e-41)             29   5.5  
SB_14555| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_57726| Best HMM Match : YiaAB (HMM E-Value=0.56)                    29   5.5  
SB_911| Best HMM Match : bZIP_1 (HMM E-Value=0.53)                     29   5.5  
SB_2637| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.3  

>SB_36468| Best HMM Match : DUF1643 (HMM E-Value=4.1)
          Length = 471

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 185 VKVVETHPIWYSTMI*QPT 129
           +K++E  P WYSTM+ +PT
Sbjct: 313 LKLIEATPPWYSTMVPKPT 331


>SB_25436| Best HMM Match : 7tm_1 (HMM E-Value=9.49996e-41)
          Length = 321

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -2

Query: 369 KDRNPSCSSYIANFI*IKTTKYTFV-SAMINPQVLYGIHSGSQKK 238
           +DR      Y  ++I +KT ++T V S+ INP +LYG  S + ++
Sbjct: 251 QDRVIIIQKYDIHYIVLKTVEFTLVCSSCINP-ILYGFQSSNYRE 294


>SB_14555| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 192

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 185 VKVVETHPIWYSTMI*QPT 129
           +K++E  P WYSTM+ +PT
Sbjct: 40  LKLIEATPPWYSTMVPKPT 58


>SB_57726| Best HMM Match : YiaAB (HMM E-Value=0.56)
          Length = 400

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 185 VKVVETHPIWYSTMI*QPT 129
           +K++E  P WYSTM+ +PT
Sbjct: 252 LKLIEATPPWYSTMVPKPT 270


>SB_911| Best HMM Match : bZIP_1 (HMM E-Value=0.53)
          Length = 260

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 185 VKVVETHPIWYSTMI*QPT 129
           +K++E  P WYSTM+ +PT
Sbjct: 127 LKLIEATPPWYSTMVPKPT 145


>SB_2637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 229

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 45/184 (24%), Positives = 76/184 (41%), Gaps = 8/184 (4%)
 Frame = -3

Query: 707 ISPLHSRCLFLKDISVNTLLWFVGNQL-SVTTRFKTSNHEETRHY*SAKGWKKTHFKIPG 531
           +SP  S   +L DI V     F+G+    + + F      + +++   + WK   FK+ G
Sbjct: 33  VSPDPSPVCWLPDIVVG----FLGSVFYQIQSLFGHLMDSKLQYFAPEQFWKC--FKLWG 86

Query: 530 QP*HKRTKY----LFC*LIQVLC*Y-KISRPHKMLKKKITSVIIDFLGCHYCQRNE*KSK 366
           QP + R +      FC L   L  + K  +  ++ KK    +  D   C  C     + +
Sbjct: 87  QPVNVREQQDAFEFFCNLTDQLDEHLKSKKQDQLFKKTFCGMFADQKICKECNHRYEREE 146

Query: 365 IAIHPVLLTLPILSKSRQLSTRL--LVQ*LTLKFCTVYIQAHKKNKFNTDQRGSVNEYRF 192
                   +LP+  K+  L   L   V    L+    Y    K NK  T  +G++N+Y  
Sbjct: 147 -----AFYSLPVTVKNHNLQDSLEQFVNGEILEGDNAYF-CEKCNKRMT-LKGNINQYNN 199

Query: 191 ICVK 180
           +C+K
Sbjct: 200 VCLK 203


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,168,769
Number of Sequences: 59808
Number of extensions: 426179
Number of successful extensions: 684
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)