Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00022
         (509 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)                    33   0.14 
SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)        28   3.9  
SB_28806| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_29258| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  

>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
          Length = 1120

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +3

Query: 12  PLAID--LLHPSPA-SERRKHKL-KRLVPHPNSYFMDVKCPGCYKITTVFSHAQRV 167
           PL  D  L H  P  S R K  + KR  P P     ++K P  Y++TT+ +H+ RV
Sbjct: 404 PLTRDPTLTHSVPIISGRLKTSMNKRTKPKPGERATEIKSPSTYQVTTMVTHSPRV 459


>SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)
          Length = 525

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +3

Query: 183 CSTILCQPTGGRARLTEGCSFRRK 254
           C  ++CQ +  ++R T+GC ++R+
Sbjct: 230 CEVLVCQRSDKKSRCTKGCPYQRR 253


>SB_28806| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 614

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 114 KCPGCYKITTVFSHAQRVVVCAGC 185
           +CP CY ++ V  + Q V  C+ C
Sbjct: 208 RCPRCYPMSKVLPNVQGVTQCSRC 231


>SB_29258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 487

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 69  LKRLVPHPNSYFMDVKCPGCYKI 137
           ++RLVP  NSY + +   GC  I
Sbjct: 95  VRRLVPRTNSYILSIDLEGCTSI 117


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,568,096
Number of Sequences: 59808
Number of extensions: 273862
Number of successful extensions: 634
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)