Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00017
         (641 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50446| Best HMM Match : HIT (HMM E-Value=1.6e-36)                   85   6e-17
SB_47103| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   6e-06
SB_1272| Best HMM Match : Ras (HMM E-Value=8.9e-08)                    39   0.004
SB_25751| Best HMM Match : HIT (HMM E-Value=2.7e-32)                   31   1.1  
SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_8915| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.6  
SB_23596| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_10640| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  

>SB_50446| Best HMM Match : HIT (HMM E-Value=1.6e-36)
          Length = 432

 Score = 84.6 bits (200), Expect = 6e-17
 Identities = 39/48 (81%), Positives = 44/48 (91%)
 Frame = +2

Query: 113 FNDVNPQAPTHVLVIPRKPIPQLSLADDTDEQLLGDLLIVARKLAAQQ 256
           F D+NPQAPTHVLVIP+KPI QLS+ADD+DEQLLG LLIVARK+AA Q
Sbjct: 30  FRDINPQAPTHVLVIPKKPIRQLSMADDSDEQLLGRLLIVARKVAAMQ 77



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 19/26 (73%), Positives = 24/26 (92%)
 Frame = +3

Query: 33  GGDTIFGKILRKEIPANFIYEDEQCV 110
           GGDTIFGKI+RKEIPA  ++ED+QC+
Sbjct: 3   GGDTIFGKIIRKEIPAEILHEDDQCL 28



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 259 LDKTGFRLVVNDGKNGAQ 312
           L   G+R+++NDGKNG Q
Sbjct: 79  LANDGYRIIINDGKNGGQ 96


>SB_47103| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 19/34 (55%), Positives = 28/34 (82%)
 Frame = +3

Query: 3   EVKLAQTAAPGGDTIFGKILRKEIPANFIYEDEQ 104
           E + AQ+A PGGDTIF +I+R ++PA FI+ED++
Sbjct: 49  EEEKAQSAVPGGDTIFSRIIRGDVPATFIHEDDK 82


>SB_1272| Best HMM Match : Ras (HMM E-Value=8.9e-08)
          Length = 492

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 21/36 (58%), Positives = 26/36 (72%), Gaps = 2/36 (5%)
 Frame = +3

Query: 3   EVKLAQTAAP--GGDTIFGKILRKEIPANFIYEDEQ 104
           EV+ A+ AA   G  TIF KIL KEIPA+ IYED++
Sbjct: 51  EVEKAKEAAKTKGEPTIFDKILSKEIPADIIYEDDK 86


>SB_25751| Best HMM Match : HIT (HMM E-Value=2.7e-32)
          Length = 161

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 268 TGFRLVVNDGKNGAQSVYHLHIHIL 342
           T   + + DG    QSV H+H+HIL
Sbjct: 81  TSLTISIQDGPEAGQSVQHVHVHIL 105


>SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 128 PQAPTHVLVIPRKPIPQLSLADDTDE 205
           P  P  + V P +PI QLSL +D D+
Sbjct: 194 PNVPDSIGVTPEEPIDQLSLYEDFDQ 219


>SB_8915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 482

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 494 CNKNNSKWT*IIYGSPEV*KVDKYENAQH 580
           CN+N  +WT +IY +P++ K D  E   +
Sbjct: 257 CNQNEDEWTHLIYLNPDMEKNDYGETVYY 285


>SB_23596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 830

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = -3

Query: 429 FEDC*FLR*NSQIAIDNKLARWPLHLPSSEDMNVKVVNALGAILSIVNNEA 277
           F+    LR   ++A + ++  W  ++PS+  + +K     G +L IVN +A
Sbjct: 10  FQGTRILRAAEKLAKEKRIRIWKEYVPSTPAIEIKDQEFSGKVLEIVNADA 60


>SB_10640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1039

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 297 KEWRPKRLPPSHSYPRRKADAV 362
           +E +PK LPPSHS P  +  AV
Sbjct: 39  EETKPKNLPPSHSIPIEEIIAV 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,405,763
Number of Sequences: 59808
Number of extensions: 375279
Number of successful extensions: 770
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)