Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00016
         (511 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)              89   1e-18
SB_43135| Best HMM Match : CMAS (HMM E-Value=0)                        31   0.73 
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.9  
SB_51078| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_1582| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.1  

>SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 89.4 bits (212), Expect = 1e-18
 Identities = 39/56 (69%), Positives = 49/56 (87%)
 Frame = +3

Query: 84  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINV 251
           M S +ELACVYSALIL DDDVA+T +KI T++KAA ++VEP+WPGLFAKAL+G N+
Sbjct: 1   MASTSELACVYSALILHDDDVAITADKIETLVKAAKINVEPFWPGLFAKALQGHNI 56



 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 385 SDDDMGFGLFD 417
           SDDDMGFGLFD
Sbjct: 100 SDDDMGFGLFD 110


>SB_43135| Best HMM Match : CMAS (HMM E-Value=0)
          Length = 254

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -3

Query: 248 IDAFQGFGEQTWPIWLYIYSRRFQDGGNFLTSYGNIIIHQDESR 117
           I+ F+  G++ WP +  + S R + GG+ +      II  DESR
Sbjct: 107 IEMFEAVGQENWPTYFQMLSERLKQGGSAVLQ----IICIDESR 146


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 385 SDDDMGFGLFD 417
           SDDDMGFGLFD
Sbjct: 752 SDDDMGFGLFD 762


>SB_51078| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 207

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
 Frame = +2

Query: 149 RNW*ENFHHLESG-------GCRCRAILARSVRQSLGRHQCPYL 259
           + W   FHH++S        GC+   ILAR +R  LG H  PY+
Sbjct: 105 KRWDRCFHHVQSSAGPVIWHGCK---ILARVLRVPLGAHWEPYI 145


>SB_1582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 296 PEQHPLQSRCW*SGTDIDAFQGFGEQTW 213
           P+  PL  +C    TD+D ++  G  TW
Sbjct: 86  PDMSPLWRKCHSQFTDVDDYRRHGNNTW 113


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,878,207
Number of Sequences: 59808
Number of extensions: 226202
Number of successful extensions: 505
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)