Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00014
(589 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_955| Best HMM Match : p450 (HMM E-Value=0) 30 1.2
SB_33320| Best HMM Match : p450 (HMM E-Value=0) 30 1.6
SB_6706| Best HMM Match : p450 (HMM E-Value=0.54) 30 1.6
SB_7950| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_30961| Best HMM Match : I-set (HMM E-Value=0) 28 4.9
SB_42341| Best HMM Match : DUF701 (HMM E-Value=3) 28 4.9
SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_48792| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_34884| Best HMM Match : RVT_1 (HMM E-Value=8.1e-25) 28 6.5
SB_2152| Best HMM Match : EGF (HMM E-Value=0) 28 6.5
SB_47365| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
>SB_955| Best HMM Match : p450 (HMM E-Value=0)
Length = 514
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = -3
Query: 455 FNSTVKPDNSAVSSFEINLYDCYQDNILMNEYFPFSIQCNSTNYLEETTILKVIHEVLVD 276
F + +K N + E+N D YFPFS N + T+L +I VL +
Sbjct: 141 FKTFLKLTNKSFGDTELNNQLFLLDLFYFTRYFPFS--AYKENQADFDTVLGIIRRVLEE 198
Query: 275 GYYYY 261
G +Y
Sbjct: 199 GKAHY 203
>SB_33320| Best HMM Match : p450 (HMM E-Value=0)
Length = 401
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = -3
Query: 455 FNSTVKPDNSAVSSFEINLYDCYQDNILMNEYFPFSIQCNSTNYLEETTILKVIHEVLVD 276
F + +K N + E+N D YFPFS N + T+L +I VL +
Sbjct: 88 FKTFLKLTNKSFGDTELNDQLFLLDLFYFTRYFPFS--AYKENQADFDTVLGIIRRVLEE 145
Query: 275 GYYYY 261
G +Y
Sbjct: 146 GKAHY 150
>SB_6706| Best HMM Match : p450 (HMM E-Value=0.54)
Length = 236
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = -3
Query: 455 FNSTVKPDNSAVSSFEINLYDCYQDNILMNEYFPFSIQCNSTNYLEETTILKVIHEVLVD 276
F + +K N + E+N D YFPFS N + T+L +I VL +
Sbjct: 88 FKTFLKLTNKSFGDTELNDQLFLLDLFYFTRYFPFS--AYKENQADFDTVLGIIRRVLEE 145
Query: 275 GYYYY 261
G +Y
Sbjct: 146 GKAHY 150
>SB_7950| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 498 RIMHLVRVSLFCCFLFVPDVNCDFK*IFS 584
R++H V++SLFC + DVN + ++S
Sbjct: 64 RVVHFVQISLFCENAYCEDVNAERNTLYS 92
>SB_30961| Best HMM Match : I-set (HMM E-Value=0)
Length = 1018
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Frame = -3
Query: 479 GVHHGGNAFNSTVKPDNSAVSSFEINLYD------CYQDNILMNEYFPFSIQCNSTNYLE 318
G HG + KPD+S +S +I + + C D + + F + N T E
Sbjct: 569 GQTHGNTTVDIQYKPDDSRLSIHDIAVINETLVLKCLADAVPQPSRYKFKV--NGTTVTE 626
Query: 317 ETTILKVIHEV 285
+ +VIH V
Sbjct: 627 SSNATRVIHRV 637
>SB_42341| Best HMM Match : DUF701 (HMM E-Value=3)
Length = 651
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +3
Query: 15 RIFWEDKRKLEQTYRPHRSAIRXXXXXXXXXVRH*KTLYQIHILF 149
R W K + + T+RP R + V H + L ++H+LF
Sbjct: 433 RCVWLHKEEQQTTHRPSRQVVTLVDYAVCPFVNH-EVLVKVHLLF 476
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +3
Query: 15 RIFWEDKRKLEQTYRPHRSAIRXXXXXXXXXVRH*KTLYQIHILF 149
R W K + + T+RP R + V H + L ++H+LF
Sbjct: 502 RCVWLHKEEQQTTHRPSRQVVTLVDYAVCPFVNH-EVLVKVHLLF 545
>SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 387
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 126 GFFSDELVIVEVPTKGGLRNDEDD 55
G+FSDE+V V + T+ GL D
Sbjct: 198 GYFSDEIVTVSIKTRAGLTEVNSD 221
>SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2162
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 183 VNNSSSKMCINKTRCEFDIGFFS 115
VN+ +S C+N C D+GFF+
Sbjct: 541 VNDCNSSPCLNNGTCVDDVGFFN 563
>SB_48792| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 498 RIMHLVRVSLFCCFLFVPDVNCD 566
R++H V++SLFC + DVN +
Sbjct: 64 RVVHFVQISLFCENAYCEDVNAE 86
>SB_34884| Best HMM Match : RVT_1 (HMM E-Value=8.1e-25)
Length = 439
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 100 NNKFVTKKPYIKFTSCFIDAHFGTRVIDILECRLINVKNCMNVV 231
N K + K+ YIK+ +ID+H + IL +K C+ V+
Sbjct: 226 NGKCIKKEKYIKYLGIYIDSHLSWK-YQILHIAK-KIKRCIGVL 267
>SB_2152| Best HMM Match : EGF (HMM E-Value=0)
Length = 1603
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 183 VNNSSSKMCINKTRCEFDIGFFS 115
VN+ +S C+N C D+GFF+
Sbjct: 328 VNDCNSSPCLNNGTCVDDVGFFN 350
>SB_47365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 648
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 583 ENIYLKSQFTSGTNKKQQKRDTRTKC 506
+ I LK +TSG+NKK R T + C
Sbjct: 126 DQIALKMSYTSGSNKKYYMRCTTSYC 151
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,123,711
Number of Sequences: 59808
Number of extensions: 347920
Number of successful extensions: 938
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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