Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00008
         (421 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21| Best HMM Match : NOC3p (HMM E-Value=0.0058)                     34   0.055
SB_28888| Best HMM Match : SNF (HMM E-Value=1.9e-07)                   32   0.22 
SB_52549| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.89 
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.7  
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_59375| Best HMM Match : TPR_2 (HMM E-Value=7.3e-06)                 27   8.3  

>SB_21| Best HMM Match : NOC3p (HMM E-Value=0.0058)
          Length = 423

 Score = 33.9 bits (74), Expect = 0.055
 Identities = 22/71 (30%), Positives = 31/71 (43%)
 Frame = +2

Query: 44  TPEECDTPDREPADDNVISAVDLMVARKEKLNNDKLRIGALCSSLLESPEKKLKNFFPIL 223
           T  E    D  P+    +S VDL   R+ KL   K  I  L S ++E+PE+ +      L
Sbjct: 183 TDSEEKAADAAPSPPPQLSVVDLFARRQLKLMEKKSLIAELSSKIMENPEENVSKEVRKL 242

Query: 224 YLMEERLKDGY 256
              EE +   Y
Sbjct: 243 RDFEEGVLTSY 253


>SB_28888| Best HMM Match : SNF (HMM E-Value=1.9e-07)
          Length = 195

 Score = 31.9 bits (69), Expect = 0.22
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +1

Query: 163 LVLIFARESREKVKKFLSYPVSNGGETEGWLLNLHSVRKLATLSAYEVFKDILPEYQIRH 342
           L +I A   + K  K+   P     E  GW+L L SV  +   + +E++K      ++RH
Sbjct: 113 LAIILANLIQWKGVKYNGKPYPGWAELIGWMLMLSSVLMIPAFAIHEIYKRSGTLREVRH 172

Query: 343 QD 348
            D
Sbjct: 173 ID 174


>SB_52549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 29.9 bits (64), Expect = 0.89
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 116 VARKEKLNNDKLRIGALCSSLLESPEKKLKNFFPILYLM 232
           + R  +LNN++ RIG   S    SP+K+ + F  I   M
Sbjct: 17  IGRAHQLNNNQTRIGVGISRSKNSPDKEFRGFINIRAFM 55


>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2749

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = +2

Query: 2   EDHDESSSDSGLLGTPEECDTPDREPADDNVISAVDLMVARKEKL-NNDKLRIGALCSSL 178
           E ++    DS L+G P +  TP   P DD   +  DL+++R+E++  + KL I     + 
Sbjct: 369 ESYNSEPEDSPLVG-PSKPPTPP--PFDDEHAAENDLLLSREERIFKHQKLEIALNEPNS 425

Query: 179 LESPEKKLKNFFP 217
           ++ P+   K   P
Sbjct: 426 VDYPKTTPKERSP 438


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 155 IGALCSSLLESPEKKLKNFFPILYLMEERLKDG 253
           + +LC SL E+  KK+K   P++   +   KDG
Sbjct: 103 MASLCDSLGENSPKKVKPIAPVIQSAKHTGKDG 135


>SB_59375| Best HMM Match : TPR_2 (HMM E-Value=7.3e-06)
          Length = 383

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
 Frame = -3

Query: 368 FNLTFE*S*CLIWYSGRMSL------NTSYADNVASFRTECRFNNHPSVSPPLDT 222
           F  TF      ++Y+GR+         TSY    ASF+  CR  N P V P  DT
Sbjct: 83  FMRTFPKGAIFLYYAGRIKQVQGKLDETSYMYLKASFKFMCRITNQP-VDPEDDT 136


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,290,487
Number of Sequences: 59808
Number of extensions: 237916
Number of successful extensions: 583
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)