Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00007
(575 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45690| Best HMM Match : Homeobox (HMM E-Value=4.6e-31) 31 0.51
SB_16156| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.51
SB_30649| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-24) 29 3.6
SB_7333| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_56291| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_24809| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_14020| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_51937| Best HMM Match : zf-CCHC (HMM E-Value=0.00067) 27 8.3
SB_49539| Best HMM Match : RVT_1 (HMM E-Value=1.8e-39) 27 8.3
SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39) 27 8.3
SB_46799| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_39101| Best HMM Match : RVT_1 (HMM E-Value=2.4e-38) 27 8.3
SB_25140| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38) 27 8.3
SB_15135| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39) 27 8.3
SB_9368| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_155| Best HMM Match : zf-CCHC (HMM E-Value=0.00067) 27 8.3
SB_46071| Best HMM Match : RVP (HMM E-Value=3e-05) 27 8.3
SB_45108| Best HMM Match : RVT_1 (HMM E-Value=4.9e-37) 27 8.3
SB_28983| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_28642| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39) 27 8.3
SB_23675| Best HMM Match : zf-CCHC (HMM E-Value=0.00067) 27 8.3
SB_19158| Best HMM Match : zf-CCHC (HMM E-Value=0.00067) 27 8.3
SB_15324| Best HMM Match : RVP (HMM E-Value=8.1e-05) 27 8.3
SB_10983| Best HMM Match : RVP (HMM E-Value=3.8e-05) 27 8.3
>SB_45690| Best HMM Match : Homeobox (HMM E-Value=4.6e-31)
Length = 255
Score = 31.5 bits (68), Expect = 0.51
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +3
Query: 225 WFVRSAKRNWQSNNTGPLEGWS*EYRGVR-RTCCWRKQSINRQK 353
W +A NW N+T GWS G R RT RKQ + +K
Sbjct: 109 WLKSTAPDNWWPNSTTGNSGWSNRAEGKRKRTAYTRKQLLELEK 152
>SB_16156| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 255
Score = 31.5 bits (68), Expect = 0.51
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +3
Query: 225 WFVRSAKRNWQSNNTGPLEGWS*EYRGVR-RTCCWRKQSINRQK 353
W +A NW N+T GWS G R RT RKQ + +K
Sbjct: 109 WLKSTAPDNWWPNSTTGNSGWSNRAEGKRKRTAYTRKQLLELEK 152
>SB_30649| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-24)
Length = 463
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/60 (21%), Positives = 28/60 (46%)
Frame = +1
Query: 334 KALTAKKGRFNPYTSTFQQCKICRTKVHQVGSHYCQACAYKKGICAMCGKKILDTKNYSR 513
KA T P+ T++ C+ + ++ HY K+ +C +C K+ + + + S+
Sbjct: 382 KAHTRTHTGERPFMCTWKDCEKRFARSDELARHYRTHTGEKRYVCKICDKRFMRSDHLSK 441
>SB_7333| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +3
Query: 303 GVRRTCCWRKQSINRQKRTI*SVHFHISTVQNLQNESTPGR 425
G+R CCW +S + I + H I QN E GR
Sbjct: 12 GIRNPCCWNPESTRKNPHGIRNPHTRIRN-QNPIGEPVMGR 51
>SB_56291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 434
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 256 RVITPDPWKAGARNTVESGGRVVGENKALTAKK 354
RV+T + W AG VE ++GEN A T +K
Sbjct: 316 RVVTANVWTAGTNANVEMD--IIGENGAETGEK 346
>SB_24809| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 780
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -1
Query: 338 ALFSPTTRPPDSTVFLAPAFQGSGVITLPISFRTS 234
A+ SPTTR + + L + Q S VIT P++ +TS
Sbjct: 226 AMPSPTTRQTSTAIPLPMSRQISAVITSPMAMQTS 260
>SB_14020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 303 GVRRTCCWRKQSINRQKRTI*SVHFHI 383
G+R TCCW +S + I + H I
Sbjct: 12 GIRNTCCWNPESTRKNPHGIRNPHTRI 38
>SB_51937| Best HMM Match : zf-CCHC (HMM E-Value=0.00067)
Length = 151
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 403 RTKVHQVGS--HYCQACAYKKGICAMCGK 483
+T H+ GS H ++C YKK C CGK
Sbjct: 106 KTACHRCGSAEHDGKSCKYKKYKCDNCGK 134
>SB_49539| Best HMM Match : RVT_1 (HMM E-Value=1.8e-39)
Length = 1311
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 403 RTKVHQVGS--HYCQACAYKKGICAMCGK 483
+T H+ GS H ++C YKK C CGK
Sbjct: 106 KTACHRCGSAEHDGKSCKYKKYKCDNCGK 134
>SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39)
Length = 1510
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 403 RTKVHQVGS--HYCQACAYKKGICAMCGK 483
+T H+ GS H ++C YKK C CGK
Sbjct: 208 KTACHRCGSAEHDGKSCKYKKYKCDNCGK 236
>SB_46799| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 66
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +3
Query: 303 GVRRTCCWRKQSINRQKRTI*SVHFHISTVQNLQNESTPGRITLL 437
G+R CCW +S + I + H + +QN E GR L
Sbjct: 12 GIRNPCCWDPESTRKNPHGIRNPH---TRIQNPIGEPVMGRTLFL 53
>SB_39101| Best HMM Match : RVT_1 (HMM E-Value=2.4e-38)
Length = 856
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 403 RTKVHQVGS--HYCQACAYKKGICAMCGK 483
+T H+ GS H ++C YKK C CGK
Sbjct: 351 KTACHRCGSAEHDGKSCKYKKYKCDNCGK 379
>SB_25140| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38)
Length = 1425
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 403 RTKVHQVGS--HYCQACAYKKGICAMCGK 483
+T H+ GS H ++C YKK C CGK
Sbjct: 877 KTACHRCGSAEHDGKSCKYKKYKCDNCGK 905
>SB_15135| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)
Length = 794
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 403 RTKVHQVGS--HYCQACAYKKGICAMCGK 483
+T H+ GS H ++C YKK C CGK
Sbjct: 343 KTACHRCGSAEHDGKSCKYKKYKCDNCGK 371
>SB_9368| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 874
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 403 RTKVHQVGS--HYCQACAYKKGICAMCGK 483
+T H+ GS H ++C YKK C CGK
Sbjct: 423 KTACHRCGSAEHDGKSCKYKKYKCDNCGK 451
>SB_155| Best HMM Match : zf-CCHC (HMM E-Value=0.00067)
Length = 296
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 403 RTKVHQVGS--HYCQACAYKKGICAMCGK 483
+T H+ GS H ++C YKK C CGK
Sbjct: 208 KTACHRCGSAEHDGKSCKYKKYKCDNCGK 236
>SB_46071| Best HMM Match : RVP (HMM E-Value=3e-05)
Length = 403
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 403 RTKVHQVGS--HYCQACAYKKGICAMCGK 483
+T H+ GS H ++C YKK C CGK
Sbjct: 208 KTACHRCGSAEHDGKSCKYKKYKCDNCGK 236
>SB_45108| Best HMM Match : RVT_1 (HMM E-Value=4.9e-37)
Length = 1122
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 403 RTKVHQVGS--HYCQACAYKKGICAMCGK 483
+T H+ GS H ++C YKK C CGK
Sbjct: 224 KTACHRCGSAEHDGKSCKYKKYKCDNCGK 252
>SB_28983| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 951
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 403 RTKVHQVGS--HYCQACAYKKGICAMCGK 483
+T H+ GS H ++C YKK C CGK
Sbjct: 494 KTACHRCGSAEHDGKSCKYKKYKCDNCGK 522
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 403 RTKVHQVGS--HYCQACAYKKGICAMCGK 483
+T H+ GS H ++C YKK C CGK
Sbjct: 547 KTACHRCGSAEHDGKSCKYKKYKCDNCGK 575
>SB_28642| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)
Length = 1750
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 403 RTKVHQVGS--HYCQACAYKKGICAMCGK 483
+T H+ GS H ++C YKK C CGK
Sbjct: 186 KTACHRCGSAEHDGKSCKYKKYKCDNCGK 214
>SB_23675| Best HMM Match : zf-CCHC (HMM E-Value=0.00067)
Length = 342
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 403 RTKVHQVGS--HYCQACAYKKGICAMCGK 483
+T H+ GS H ++C YKK C CGK
Sbjct: 181 KTACHRCGSAEHDGKSCKYKKYKCDNCGK 209
>SB_19158| Best HMM Match : zf-CCHC (HMM E-Value=0.00067)
Length = 369
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 403 RTKVHQVGS--HYCQACAYKKGICAMCGK 483
+T H+ GS H ++C YKK C CGK
Sbjct: 208 KTACHRCGSAEHDGKSCKYKKYKCDNCGK 236
>SB_15324| Best HMM Match : RVP (HMM E-Value=8.1e-05)
Length = 415
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 403 RTKVHQVGS--HYCQACAYKKGICAMCGK 483
+T H+ GS H ++C YKK C CGK
Sbjct: 45 KTACHRCGSAEHDGKSCKYKKYKCDNCGK 73
>SB_10983| Best HMM Match : RVP (HMM E-Value=3.8e-05)
Length = 717
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 403 RTKVHQVGS--HYCQACAYKKGICAMCGK 483
+T H+ GS H ++C YKK C CGK
Sbjct: 247 KTACHRCGSAEHDGKSCKYKKYKCDNCGK 275
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,337,791
Number of Sequences: 59808
Number of extensions: 336294
Number of successful extensions: 815
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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