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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00005
         (439 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43576| Best HMM Match : EGF_CA (HMM E-Value=2.7e-38)                29   2.2  
SB_45852| Best HMM Match : I-set (HMM E-Value=0)                       28   2.9  
SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)            24   3.6  
SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.1  
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)                 27   6.8  
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)            27   6.8  
SB_17117| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)                   27   6.8  
SB_46380| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   8.9  

>SB_43576| Best HMM Match : EGF_CA (HMM E-Value=2.7e-38)
          Length = 641

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 37  TLATTTIQFLVKVVIHQHHHFWT*ANFHH*QQEARVTKHPLQHHHLRALN 186
           T++      ++ +VI+QHHH     N HH   + +  +H    HH +  N
Sbjct: 553 TISIINSMIIINIVINQHHH-QKQQNQHHRHHQKQQNQH--HRHHQKKQN 599


>SB_45852| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1122

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 55   IQFLVKVVIHQHHHFWT*ANFHH*QQEARVTKHPLQHHH 171
            I  ++ +  H HHH     ++HH QQ      H   HHH
Sbjct: 1022 ITIIITIFNHYHHHRRRHHHYHHQQQ------HQFHHHH 1054


>SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)
          Length = 416

 Score = 24.2 bits (50), Expect(2) = 3.6
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +1

Query: 19  VICHGSTLATTTIQFLVKVVIHQHHH 96
           +I H     +++   ++ ++IH HHH
Sbjct: 292 IIIHHHHHPSSSSSIIIIIIIHHHHH 317



 Score = 22.2 bits (45), Expect(2) = 3.6
 Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +1

Query: 73  VVIHQHHHFWT*AN-FHH*QQEARVTKHP 156
           ++IH HHH  + ++  HH      +  HP
Sbjct: 326 IIIHHHHHPSSSSSIIHHHPSSIIIHHHP 354


>SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 437 VCLLLCLQEKSVSLCASCLVLVQC 366
           VC++LC     + LC SC+ +V C
Sbjct: 125 VCIVLCPSCVCIVLCPSCVCIVLC 148


>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
          Length = 839

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 10/36 (27%), Positives = 14/36 (38%)
 Frame = +1

Query: 64  LVKVVIHQHHHFWT*ANFHH*QQEARVTKHPLQHHH 171
           ++ +  H HHH       HH         +P  HHH
Sbjct: 561 IIAISTHPHHHHLHHHRHHHRHHHYHHHHYPHHHHH 596


>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
          Length = 694

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +1

Query: 37  TLATTTIQFLVK--VVIHQHHHFWT*ANFHH*QQEARVTKHPLQHHH 171
           T+ +TTI  +    +VI++ HH     + HH  Q      H   HHH
Sbjct: 190 TITSTTIITMPSPSIVIYRRHHQHHQHHHHHHHQHNHHHHHHNHHHH 236


>SB_17117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +1

Query: 28  HGSTLATTTIQFLVKVVIHQHHHF 99
           + S+L +  I  ++ V++H HHH+
Sbjct: 306 YASSLPSLCIIIIITVIMHHHHHY 329


>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
          Length = 453

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 82  HQHHHFWT*ANFHH*QQEARVTKHPLQHHH 171
           H+HHH     + HH Q+     +H  +HHH
Sbjct: 315 HRHHHHH---HHHHHQRHRHRHRHRHRHHH 341


>SB_46380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +1

Query: 82  HQHHHFWT*ANFHH*QQEARVTKHPLQHHHLRALN 186
           H HHH +    ++H   + +  +H  +HHH   L+
Sbjct: 8   HSHHHHYPHYQYNH-HHDQQSHQHHDRHHHREVLD 41


>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 736

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +1

Query: 82  HQHHHFWT*ANFHH*QQEARVTKHPLQHHHL 174
           H HHH     N HH  Q+     H   HHH+
Sbjct: 272 HHHHHHHHHHNHHHHHQQ----HHHHHHHHI 298


>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 439  RYVCYCAFRRSLYPFARLVWCLCNVC 362
            RY+C CAF       +    CLC +C
Sbjct: 1914 RYICLCAFCIFALSVSLRYLCLCAIC 1939


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,434,620
Number of Sequences: 59808
Number of extensions: 181051
Number of successful extensions: 579
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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