Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0197.Seq
         (788 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)             109   3e-24
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)          107   1e-23
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                97   1e-20
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 73   4e-13
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.11 
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              33   0.20 
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.46 
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              31   1.1  
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     30   2.5  
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               29   4.3  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.7  
SB_11886| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)               28   7.5  
SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.5  
SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_3739| Best HMM Match : Pkinase (HMM E-Value=0)                      28   9.9  

>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score =  109 bits (261), Expect = 3e-24
 Identities = 49/80 (61%), Positives = 62/80 (77%)
 Frame = +1

Query: 259 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 438
           L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQTREH
Sbjct: 5   LTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQTREH 64

Query: 439 ALLAFTLGVKQLIVGVNKMD 498
           A+L  +LGV QLIV +NK+D
Sbjct: 65  AILVRSLGVTQLIVAINKLD 84


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score =  107 bits (257), Expect = 1e-23
 Identities = 49/106 (46%), Positives = 68/106 (64%)
 Frame = +1

Query: 268 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 447
           F+T   + T++DAPGH+ F+ NMI+G +QAD  VL+++A  GEFE G  + GQTREHA+L
Sbjct: 217 FDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAML 276

Query: 448 AFTLGVKQLIVGVNKMDSTEHHTVSPDLRKSRRKYPHTFKKIGYNP 585
           A T GVK L++ VNKMD            + + K     KK+G+NP
Sbjct: 277 AKTAGVKHLVILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 17/40 (42%), Positives = 28/40 (70%)
 Frame = +3

Query: 117 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 236
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + ER+
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERD 205


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +3

Query: 33  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 179
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 72.5 bits (170), Expect = 4e-13
 Identities = 31/33 (93%), Positives = 32/33 (96%)
 Frame = +1

Query: 256 ALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 354
           ALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 28  ALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 20/20 (100%), Positives = 20/20 (100%)
 Frame = +3

Query: 177 MGKGSFKYAWVLDKLKAERE 236
           MGKGSFKYAWVLDKLKAERE
Sbjct: 1   MGKGSFKYAWVLDKLKAERE 20


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 24/70 (34%), Positives = 34/70 (48%)
 Frame = +1

Query: 289 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 468
           +T ID PGH  F      G +  D  VL+VAA  G      ++  ++  HA+ A      
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----KTQTVESIRHAMHAKV---- 129

Query: 469 QLIVGVNKMD 498
            LIV +NK+D
Sbjct: 130 PLIVAINKID 139


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +1

Query: 298 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 477
           +D PGH   +  M+ G +  D A+L++A              QT EH      + +K ++
Sbjct: 69  VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122

Query: 478 VGVNKMD 498
           +  NK+D
Sbjct: 123 ILQNKID 129


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +3

Query: 33  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 128
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43



 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 283 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 393
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +1

Query: 226 LSVXRYHNRYALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 378
           L+  R   +    +F+     + IID PGH  F      G+S  D A+L+V
Sbjct: 659 LNAIRIQTKMVKEEFDIKIPGLLIIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +1

Query: 289 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 393
           + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 81  INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 48  THINIVVIGHVDSGKSTTTGHLIY 119
           T I + V+G+V+SGKST  G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 20/70 (28%), Positives = 29/70 (41%)
 Frame = +1

Query: 289 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 468
           +  +D PGH  F      G    D  +++VAA             QT+E    A   GV 
Sbjct: 140 IAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP-------QTKEAISHAQAAGV- 191

Query: 469 QLIVGVNKMD 498
            +I  +NK+D
Sbjct: 192 PIIFAINKID 201


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 57   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 155
            N  ++ HVD GKST    L+   G I K +  K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975


>SB_11886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 87

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +3

Query: 534 EIKKEVSSYIQEDWLQPSCCRFRAHFWMAR 623
           E+  E    I E WL+  C  F A  W AR
Sbjct: 17  ELDSECRQIISEIWLRDDCVTFPAPLWRAR 46


>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
          Length = 568

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = +1

Query: 412 SKNGQTREHALLAFTLGVKQLIVGVNKMDSTEHHTVSPDLRKSRRKYPHTFK 567
           +K   T+ H +  +T   +       K  +T+ HT+ P   K     PHT K
Sbjct: 19  TKTHTTKPHNIKLYTTKPRTTKPHTTKPHTTKPHTIKPHTTKPHTTKPHTTK 70


>SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1362

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +1

Query: 607  ISGWHGDNMLEPSTKMLGSXD 669
            I GW G+N+LE S++++ S D
Sbjct: 1091 IEGWEGENVLERSSELIHSGD 1111


>SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1143

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 517 VSPDLRKSRRKYPHTFKKIGYNPAAVAFVPISGWHG 624
           +S DLR SRRK    + +  Y+ A V  + +S +HG
Sbjct: 354 LSADLRNSRRKTAKKYSRTHYD-ACVTVISLSVFHG 388


>SB_3739| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 490

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 444 ARFHPRCQTAHRRSKQNGFH*TPYSEPRFEEIKK 545
           A F PR +  +R  ++N  H  PYS+   EE +K
Sbjct: 118 ADFAPRARQPNREHRENERHNRPYSQGYHEEERK 151


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,809,777
Number of Sequences: 59808
Number of extensions: 528242
Number of successful extensions: 1353
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1339
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)