Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0068.Seq
         (978 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54338| Best HMM Match : Ligase_CoA (HMM E-Value=0)                  36   0.066
SB_4556| Best HMM Match : zf-C3HC4 (HMM E-Value=3.5)                   29   5.7  
SB_13324| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.6  

>SB_54338| Best HMM Match : Ligase_CoA (HMM E-Value=0)
          Length = 445

 Score = 35.5 bits (78), Expect = 0.066
 Identities = 21/54 (38%), Positives = 26/54 (48%)
 Frame = +1

Query: 592 KLVGPNCPGIIAPEECXNWXXASWQSXXXXXHXALVSRSGXIEPNEACHXTTYY 753
           +L+GPNCPG+I P EC                  +VSRSG +   EA   TT Y
Sbjct: 14  RLIGPNCPGVITPGECKIGIMPG--HIHLPGKVGIVSRSGTL-TYEAVKQTTDY 64


>SB_4556| Best HMM Match : zf-C3HC4 (HMM E-Value=3.5)
          Length = 199

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 145 CQCRVLSKFKDGLKTRQCTICI 210
           C C+V S++ D  K R C +C+
Sbjct: 18  CDCKVASQWADAEKVRLCEVCV 39


>SB_13324| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 446

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -3

Query: 793 PSNXDTTKVWPKPSNK*SXDRLHWVQXPQNGIPTP 689
           PS  D  K +  P N  +  R  W Q P + +P P
Sbjct: 113 PSTEDECKAFRYPQNSPNGTRATWKQFPSHDLPPP 147


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,820,632
Number of Sequences: 59808
Number of extensions: 422357
Number of successful extensions: 1523
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1523
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2895879843
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)