Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0056.Seq
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)                       75   7e-14
SB_37396| Best HMM Match : PEPCK (HMM E-Value=0)                       70   2e-12
SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)                        62   4e-10
SB_15741| Best HMM Match : MANEC (HMM E-Value=2.7)                     29   3.6  

>SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 613

 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 31/43 (72%), Positives = 39/43 (90%)
 Frame = +2

Query: 125 GRTMYVIPFSMGPXGSPLSKIGVEITDSPYVVYSMRVMTRIGA 253
           GRTMYV+PFSMGP GSP+SKIG+++TDS YVV  MR+MTR+G+
Sbjct: 128 GRTMYVLPFSMGPVGSPISKIGIQLTDSEYVVCCMRIMTRMGS 170



 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 29/69 (42%), Positives = 41/69 (59%)
 Frame = +3

Query: 423 VGQEVLRLRLGSVIARREGWLAEXMXIVG*PTLKVRSATSLPXXLAXCGKTNLAIMTPTL 602
           +G++   LR+ S IA  EGWLAE M I+G    + +         + CGKTNLA++TPT+
Sbjct: 232 LGKKCFALRIASNIAHDEGWLAEHMMIMGLTNPEGKKIYIAAAFPSACGKTNLAMLTPTI 291

Query: 603 PGYKXXAWG 629
           PG+K    G
Sbjct: 292 PGWKCECVG 300



 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 31/69 (44%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
 Frame = +1

Query: 250 SEVLEILRQDEQFVRCLHAVGSGGTPG-----WPCDPKNTIILHXPAXXXXXXXXXXXXX 414
           S VL+ L  D  FVR +H+VG     G     WPCDP+ T+I H PA             
Sbjct: 170 SHVLKALG-DGDFVRGVHSVGFPLKEGVKEVPWPCDPERTLITHFPATREIKSYGSGYGG 228

Query: 415 NSLLGKKCF 441
           NSLLGKKCF
Sbjct: 229 NSLLGKKCF 237


>SB_37396| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 549

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 37/74 (50%), Positives = 45/74 (60%)
 Frame = +2

Query: 134 MYVIPFSMGPXGSPLSKIGVEITDSPYVVYSMRVMTRIGARF*KFYVKTSSSFVVFTQSA 313
           MYV+PFSMGP GSP+SKIG+E+TDS YVV  MR+MTR+G+   K        FV    S 
Sbjct: 1   MYVMPFSMGPVGSPISKIGIELTDSEYVVCCMRIMTRMGSHVLK--ALGDGDFVRCLHSV 58

Query: 314 PGALRVGXATLRTP 355
            G L  G   +  P
Sbjct: 59  GGPLHDGKNNVPWP 72



 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 31/69 (44%), Positives = 43/69 (62%)
 Frame = +3

Query: 423 VGQEVLRLRLGSVIARREGWLAEXMXIVG*PTLKVRSATSLPXXLAXCGKTNLAIMTPTL 602
           +G++   LR+ SVIAR EGWLAE M I+G    + +         + CGKTNLA++TPT+
Sbjct: 102 LGKKCFALRIASVIARDEGWLAEHMMILGLTNPEGKKIYIAAAFPSACGKTNLAMLTPTI 161

Query: 603 PGYKXXAWG 629
           PG+K    G
Sbjct: 162 PGWKCECVG 170



 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 37/85 (43%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
 Frame = +1

Query: 250 SEVLEILRQDEQFVRCLHAVGSGGTPG-----WPCDPKNTIILHXPAXXXXXXXXXXXXX 414
           S VL+ L  D  FVRCLH+VG     G     WPCDP+ T+I H P              
Sbjct: 40  SHVLKALG-DGDFVRCLHSVGGPLHDGKNNVPWPCDPERTLITHFPETREIKSYGSGYGG 98

Query: 415 NSLLGKKCFVYVWXQ*SLVAKD-GW 486
           NSLLGKKCF       S++A+D GW
Sbjct: 99  NSLLGKKCFALRIA--SVIARDEGW 121


>SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 707

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 36/84 (42%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
 Frame = +1

Query: 250 SEVLEILRQDEQFVRCLHAVGSGGTPG-----WPCDPKNTIILHXPAXXXXXXXXXXXXX 414
           S VL+ L Q + FV+CLH+VG     G     WPCDP  TII H PA             
Sbjct: 354 SHVLKALDQGD-FVKCLHSVGKPLKEGEKDVLWPCDPDRTIITHFPADNYIKSFGSGYGG 412

Query: 415 NSLLGKKCFVYVWXQ*SLVAKDGW 486
           NSLLGKKCF  +    ++  K+GW
Sbjct: 413 NSLLGKKCFA-LRIASNIALKEGW 435



 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 27/69 (39%), Positives = 40/69 (57%)
 Frame = +3

Query: 423 VGQEVLRLRLGSVIARREGWLAEXMXIVG*PTLKVRSATSLPXXLAXCGKTNLAIMTPTL 602
           +G++   LR+ S IA +EGWLAE M I+     + +         + CGKTNLA++ PT+
Sbjct: 416 LGKKCFALRIASNIALKEGWLAEHMLIMALTNPEGKKKYIAAAFPSACGKTNLAMLKPTI 475

Query: 603 PGYKXXAWG 629
           PG+K    G
Sbjct: 476 PGWKVDCVG 484



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 21/34 (61%), Positives = 30/34 (88%)
 Frame = +2

Query: 152 SMGPXGSPLSKIGVEITDSPYVVYSMRVMTRIGA 253
           +MGP GSP++KIG+++TDS YVV  MR+MTR+G+
Sbjct: 321 NMGPVGSPIAKIGIQLTDSEYVVCCMRIMTRMGS 354


>SB_15741| Best HMM Match : MANEC (HMM E-Value=2.7)
          Length = 263

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = -2

Query: 343 GRXANPECPRSRLREDNERTARLDVEFLEPRSNSSHDSHRIN-HVRRIRDFY-ADLRERR 170
           GR A+PE     L +   R         EP +++S +  R+N   R  R    +++ +  
Sbjct: 127 GRRADPESNTDNLTKTKRRKRLFGGNQTEPVTDASLNEKRLNERFREHRSVIDSNVEDSA 186

Query: 169 SXRTHREWYHVH 134
           S R H E + VH
Sbjct: 187 STRRHHERFQVH 198


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,787,774
Number of Sequences: 59808
Number of extensions: 352585
Number of successful extensions: 727
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)