Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0055.Seq
         (797 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)        118   7e-27
SB_11799| Best HMM Match : Keratin_B2 (HMM E-Value=0.69)               30   1.9  
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)                        29   4.4  
SB_42855| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
          Length = 261

 Score =  118 bits (283), Expect = 7e-27
 Identities = 54/80 (67%), Positives = 64/80 (80%)
 Frame = +3

Query: 255 NNPALEKLLPHIKGNVGFVFTRGXLV*VRDKLLEXKVQAPARPGAIXPLSVVIPAXNTGL 434
           NNP LEKLLPHIKGN+GFVFT+  L  VR  ++E KV APA+ G I P+ V +PA NTGL
Sbjct: 53  NNPDLEKLLPHIKGNIGFVFTKEDLADVRKIIMENKVAAPAKAGVIAPIDVFVPAGNTGL 112

Query: 435 GPEKTSFFQALSIPTKXSKG 494
           GPEKTSFFQAL+IPTK ++G
Sbjct: 113 GPEKTSFFQALAIPTKIARG 132



 Score = 73.7 bits (173), Expect = 2e-13
 Identities = 35/51 (68%), Positives = 39/51 (76%)
 Frame = +1

Query: 100 QLLDXYPKCFIVGADNVGSQQMHQIXISLRGSSIVLMGKNTMMRKAIKDHL 252
           Q LD YPK F+VG DNVGS+QM  I  SLRG   VLMGKNTM+RKAI+ HL
Sbjct: 1   QYLDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKAIRGHL 51


>SB_11799| Best HMM Match : Keratin_B2 (HMM E-Value=0.69)
          Length = 430

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 1/105 (0%)
 Frame = +1

Query: 121 KCFIVGADNVGSQQMHQIXISLRGSSIVLMGKNTMMRKAIKDHLXTIQPSRNCCHTSRAT 300
           +C    +  V S  + Q  +S+R +       + ++   ++  + +I+P+R C HTS   
Sbjct: 51  RCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKVLSTYVQQGVVSIRPARCCQHTSSKV 110

Query: 301 LAS-CSPAEXSXRSVTNCWXTKSKLQLVLVPLXHCQSSFPPXTPA 432
           L++       S R    C  T SK+    V   + Q       PA
Sbjct: 111 LSTYVQLGVVSIRPARCCQHTSSKVLSAYVQQAYVQQGVVSIRPA 155



 Score = 29.1 bits (62), Expect = 4.4
 Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
 Frame = +1

Query: 100 QLLDXYPKCFIVGADNVGSQQMHQIXISLRGSSIVLMGKNTMMRKAIKDHLXTIQPSRNC 279
           ++L    +C    +  V S  + Q  +S+R +       + ++   ++  + +I+P+R C
Sbjct: 204 KVLSRPARCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKVLSAYVQQGVVSIRPARCC 263

Query: 280 CHTSRATLAS-CSPAEXSXRSVTNCWXTKSKL 372
            HTS   L++       S R    C  T SK+
Sbjct: 264 QHTSSKVLSTYVQSGVVSIRPARCCQHTSSKV 295



 Score = 28.7 bits (61), Expect = 5.8
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = +1

Query: 121 KCFIVGADNVGSQQMHQIXISLRGSSIVLMGKNTMMRKAIKDHLXTIQPSRNCCHTSRAT 300
           +C    +  V S  + Q  +S+R +       + ++   ++  + +I+P+R C HTS   
Sbjct: 320 RCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKV 379

Query: 301 L-ASCSPAEXSXRSVTNCWXTKSKL 372
           L A       S R    C  T SK+
Sbjct: 380 LSAYVQQGVVSIRPARCCQHTSSKV 404



 Score = 28.3 bits (60), Expect = 7.6
 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
 Frame = +1

Query: 139 ADNVGSQQMHQIXISLRGSSIVLMGKNTMMRKAIKDHLXTIQPSRNCCHTSRATL-ASCS 315
           +  V S  + Q  +S+R +       + ++   ++  + +I+P+R C HTS   L A   
Sbjct: 301 SSKVLSAYVQQGVVSIRPARCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKVLSAYVQ 360

Query: 316 PAEXSXRSVTNCWXTKSKL 372
               S R    C  T SK+
Sbjct: 361 QGVVSIRPARCCQHTSSKV 379



 Score = 28.3 bits (60), Expect = 7.6
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = +1

Query: 121 KCFIVGADNVGSQQMHQIXISLRGSSIVLMGKNTMMRKAIKDHLXTIQPSRNCCHTSRAT 300
           +C    +  V S  + Q  +S+R +       + ++   ++  + +I+P+R C HTS   
Sbjct: 345 RCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKV 404

Query: 301 L-ASCSPAEXSXRSVTNCWXTKSKL 372
           L A       S R    C  T SK+
Sbjct: 405 LSAYVQQGVVSIRPARCCEHTSSKV 429


>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
          Length = 870

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -1

Query: 467 KSLEERGLLWTEAGVXGGND 408
           K+LEERGLL+  +GV GG +
Sbjct: 160 KALEERGLLFVGSGVSGGEE 179


>SB_42855| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 201 RAHGKKHNDAQSHQRPPGNN 260
           R HGKK     S +RP GNN
Sbjct: 89  RHHGKKEKQRHSEKRPKGNN 108


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,463,723
Number of Sequences: 59808
Number of extensions: 396686
Number of successful extensions: 763
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)