Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0025.Seq
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79)            29   4.3  
SB_23642| Best HMM Match : Neuromodulin (HMM E-Value=4.7)              29   4.3  
SB_44098| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79)
          Length = 1091

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 220  NDTYTTTKENISLGH*LASTGRWQHGGQ 303
            +DTY  TK  +  G  ++S G W HG +
Sbjct: 1003 SDTYLLTKSYVKGGDAISSGGEWPHGNR 1030


>SB_23642| Best HMM Match : Neuromodulin (HMM E-Value=4.7)
          Length = 286

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 220 NDTYTTTKENISLGH*LASTGRWQHGGQ 303
           +DTY  TK  +  G  ++S G W HG +
Sbjct: 198 SDTYLLTKSYVKGGDAISSGGEWPHGNR 225


>SB_44098| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = -2

Query: 335 SGPRCRCRNLFCPPCCQRPVDAN*WPKLIFS----LVVVYVSFPYYCDKLSR 192
           +G  C C+N    P CQ  +D      +I +    L++V V   YYC ++SR
Sbjct: 191 NGFECLCKNFRYGPLCQDGIDVLPMVVIILALLILLIIVTVLVLYYC-RMSR 241


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,795,787
Number of Sequences: 59808
Number of extensions: 267031
Number of successful extensions: 535
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)