Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0014.Seq
         (827 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39998| Best HMM Match : Peptidase_C1 (HMM E-Value=0)                35   0.093
SB_4471| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.093
SB_11428| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.21 
SB_29711| Best HMM Match : Peptidase_C1 (HMM E-Value=6.9e-06)          31   0.86 
SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_1231| Best HMM Match : UCH (HMM E-Value=1e-13)                      29   4.6  

>SB_39998| Best HMM Match : Peptidase_C1 (HMM E-Value=0)
          Length = 1220

 Score = 34.7 bits (76), Expect = 0.093
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = +3

Query: 507 PSRWTGGSTGAVXDIKXQGKXGSFWAFSTTG 599
           PS       G V  +K QG+ GS WAFSTTG
Sbjct: 44  PSSVDWSQKGYVTGVKNQGQCGSCWAFSTTG 74


>SB_4471| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 331

 Score = 34.7 bits (76), Expect = 0.093
 Identities = 15/24 (62%), Positives = 17/24 (70%)
 Frame = +3

Query: 528 STGAVXDIKXQGKXGSFWAFSTTG 599
           S G V  +K QG+ GS WAFSTTG
Sbjct: 123 SKGYVTPVKNQGQCGSCWAFSTTG 146


>SB_11428| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 521

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +3

Query: 534 GAVXDIKXQGKXGSFWAFSTTG 599
           G V  +K QG+ GS WAFSTTG
Sbjct: 343 GYVTPVKNQGQCGSCWAFSTTG 364


>SB_29711| Best HMM Match : Peptidase_C1 (HMM E-Value=6.9e-06)
          Length = 385

 Score = 31.5 bits (68), Expect = 0.86
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = +3

Query: 528 STGAVXDIKXQGKXGSFWAFSTTG 599
           S GAV   K QG  GS WAF+T G
Sbjct: 139 SDGAVNPAKGQGTCGSCWAFATAG 162


>SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 859

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 534 GAVXDIKXQGKXGSFWAFSTTG 599
           GAV  +K Q   GS W+F TTG
Sbjct: 650 GAVTPVKDQAVCGSCWSFGTTG 671


>SB_1231| Best HMM Match : UCH (HMM E-Value=1e-13)
          Length = 969

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 143 YCCYAQWLL*VLCTSXTWSRKSGVPSSCSTVSTTK 247
           YC Y  W+  ++  S + +  SG  SSC+   TTK
Sbjct: 467 YCTYGDWV--IVSESPSATTDSGYGSSCNCTKTTK 499


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,067,943
Number of Sequences: 59808
Number of extensions: 238535
Number of successful extensions: 456
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)