Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0075
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52142| Best HMM Match : Recombinase (HMM E-Value=8.2)               60   1e-09
SB_48350| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.71 
SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.93 
SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)                   28   5.0  
SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18)                     28   5.0  
SB_17882| Best HMM Match : ShTK (HMM E-Value=1e-05)                    28   6.6  
SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_52142| Best HMM Match : Recombinase (HMM E-Value=8.2)
          Length = 193

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 26/30 (86%), Positives = 26/30 (86%)
 Frame = +2

Query: 509 NKEVYKFLETAGAKYXVGFWKPGSGIIHQI 598
           NKEVY FL TA AKY VGFWKPGSGIIHQI
Sbjct: 136 NKEVYNFLATASAKYGVGFWKPGSGIIHQI 165



 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 26/41 (63%), Positives = 33/41 (80%)
 Frame = +3

Query: 408 SGLPRVAVPSTIHCDHLIEAQVGGEKDLARAKDLTKKYTSF 530
           S   +VAVPSTIHCDHLIEA+ GG +DLA+AKD+ K+  +F
Sbjct: 102 SSWQKVAVPSTIHCDHLIEAKDGGSQDLAKAKDINKEVYNF 142


>SB_48350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 883

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
 Frame = +3

Query: 333 YLRLRPDRVA-MQDATAQMAMLQFISSGLPRVAVPSTIHC---DHLIEAQVGGEKDLARA 500
           +LR+R +R   ++ AT     LQ + SG  RV VP ++     DHL  + +GGE  L RA
Sbjct: 468 HLRIREERPRQLKKATETDDTLQTLKSG-ERVIVPESMRKEIKDHLHISHLGGESMLRRA 526

Query: 501 KD 506
           ++
Sbjct: 527 RE 528


>SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1788

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 396  VTLPFVQWRLAWPHGRDAGGDNLRRVQFPVLWGHPS 289
            +TLP  +W++A+  G     +N R+V + VL+G  S
Sbjct: 943  LTLPLRRWKIAFRFGAGTSDNNGRKVFYTVLFGQSS 978


>SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)
          Length = 1284

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 425 YTGKAGRDKL*HCHLCSGVLHG 360
           + G AG+DK+  C +CS   HG
Sbjct: 824 FCGSAGKDKMFFCKVCSEPFHG 845


>SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18)
          Length = 458

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 425 YTGKAGRDKL*HCHLCSGVLHG 360
           + G AG+DK+  C +CS   HG
Sbjct: 165 FCGSAGKDKMFFCKVCSEPFHG 186


>SB_17882| Best HMM Match : ShTK (HMM E-Value=1e-05)
          Length = 387

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 191 LSNLDIATWAAAAVNGDTLKH 129
           L N+ IATWA    N +T KH
Sbjct: 142 LRNVAIATWALVLANSNTFKH 162


>SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2123

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 118 FQRVPPLSCYPGHAKLSYSAPWSPDFSILNELI 20
           F R   L CYP   +L  S P +PD+  +  L+
Sbjct: 676 FTRADKLWCYPPQPQLISSQPPNPDYYFIQPLL 708


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,446,800
Number of Sequences: 59808
Number of extensions: 379709
Number of successful extensions: 902
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)