Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0063
         (486 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_54365| Best HMM Match : PI-PLC-Y (HMM E-Value=0)                    28   4.7  
SB_6273| Best HMM Match : MAM (HMM E-Value=0)                          28   4.7  
SB_3978| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-06)                  27   6.2  
SB_56738| Best HMM Match : Extensin_2 (HMM E-Value=0.076)              27   8.2  

>SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1277

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -3

Query: 472 LTRKTKNTVRTASYNIKRPSRRHFPTSEPRQRTASRXLEDRGATTRSEAQRA 317
           LTR++ NT R+ +      +RRH   S     T  R       TTRS  +R+
Sbjct: 731 LTRRSSNTTRSHTRRSSNTTRRHTRRS---SNTTRRHTRRSSNTTRSHTRRS 779


>SB_54365| Best HMM Match : PI-PLC-Y (HMM E-Value=0)
          Length = 593

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -3

Query: 472 LTRKTKNTVRTASYNIKRPSRRHFPTSEPRQRT-ASRXLED 353
           L R T NT +T  Y+  R  R H     PR+ T  +R L D
Sbjct: 79  LARYTPNTRKTRVYSNTRKPREHDANKNPRKTTKLARELSD 119


>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
          Length = 4272

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 356  FKXSGGCSLSWFGCWEMSATGPLNIVTRCS 445
            FK S  C + WF     S+ G LN+ TR S
Sbjct: 2893 FKPSSTCRVRWFYHMMGSSMGSLNVYTRTS 2922


>SB_3978| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-06)
          Length = 259

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 228 RLTDHLTTASNGSDSSSRGTEYST 157
           RLT++  +ASNGSD  +   E ST
Sbjct: 2   RLTNYTLSASNGSDDETSNKEVST 25


>SB_56738| Best HMM Match : Extensin_2 (HMM E-Value=0.076)
          Length = 869

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = -3

Query: 421 RPSRRHFPTSEPRQRTASRXLEDR--GATTR 335
           +P+RR   + +P+Q  A R +EDR  G TT+
Sbjct: 762 KPTRRFSASGKPQQSPALRLIEDRIEGRTTK 792


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,470,113
Number of Sequences: 59808
Number of extensions: 253603
Number of successful extensions: 832
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)