Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0062
(548 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26182| Best HMM Match : Glycolytic (HMM E-Value=0) 130 1e-30
SB_28080| Best HMM Match : Glycolytic (HMM E-Value=0) 130 1e-30
SB_11670| Best HMM Match : TP2 (HMM E-Value=3.5) 31 0.47
SB_58036| Best HMM Match : Cadherin (HMM E-Value=0) 29 3.3
SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26) 27 7.6
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 27 7.6
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0) 27 7.6
SB_20450| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_10368| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
>SB_26182| Best HMM Match : Glycolytic (HMM E-Value=0)
Length = 949
Score = 130 bits (313), Expect = 1e-30
Identities = 63/86 (73%), Positives = 70/86 (81%), Gaps = 1/86 (1%)
Frame = +3
Query: 3 GIKVDKGVVPLFGSE-DECTTQGLDDLAQRCAQYKKDGCHFAKWRCVLKIGRNTPSYQAI 179
GIKVDKGVV L G++ E TTQGLD L +RCAQYKKDGC FAKWRCVLKI TPS A+
Sbjct: 103 GIKVDKGVVVLAGTDAGETTTQGLDGLGERCAQYKKDGCDFAKWRCVLKITDYTPSELAM 162
Query: 180 QENANVLARYASICQSQRIVPIVEPK 257
+ENANVLARYASICQ +VPIVEP+
Sbjct: 163 KENANVLARYASICQQNGLVPIVEPE 188
Score = 110 bits (265), Expect = 6e-25
Identities = 53/90 (58%), Positives = 62/90 (68%)
Frame = +2
Query: 254 QVLPDGEHDLDRAQKVTXXXXXXXXXXXNDHHVYLEGXLLKPNXVXAGQSCKKTYTPNXV 433
+VL DG+H L+RAQKVT DHH+YLEG LLKPN V AGQSC YTP
Sbjct: 188 EVLCDGDHTLERAQKVTEAVLSATYKALMDHHIYLEGTLLKPNMVTAGQSCPTKYTPEQC 247
Query: 434 ARATVNXLLRTVPAAVPGVTFLSGGSSKKR 523
A+ATV L RTVP A+PGVTFLSGG S+++
Sbjct: 248 AQATVTALARTVPPAMPGVTFLSGGQSEEQ 277
>SB_28080| Best HMM Match : Glycolytic (HMM E-Value=0)
Length = 304
Score = 130 bits (313), Expect = 1e-30
Identities = 63/86 (73%), Positives = 70/86 (81%), Gaps = 1/86 (1%)
Frame = +3
Query: 3 GIKVDKGVVPLFGSE-DECTTQGLDDLAQRCAQYKKDGCHFAKWRCVLKIGRNTPSYQAI 179
GIKVDKGVV L G++ E TTQGLD L +RCAQYKKDGC FAKWRCVLKI TPS A+
Sbjct: 103 GIKVDKGVVVLAGTDAGETTTQGLDGLGERCAQYKKDGCDFAKWRCVLKITDYTPSELAM 162
Query: 180 QENANVLARYASICQSQRIVPIVEPK 257
+ENANVLARYASICQ +VPIVEP+
Sbjct: 163 KENANVLARYASICQQNGLVPIVEPE 188
Score = 55.2 bits (127), Expect = 3e-08
Identities = 26/47 (55%), Positives = 30/47 (63%)
Frame = +2
Query: 254 QVLPDGEHDLDRAQKVTXXXXXXXXXXXNDHHVYLEGXLLKPNXVXA 394
+VL DG+H L+RAQKVT DHH+YLEG LLKPN V A
Sbjct: 188 EVLCDGDHTLERAQKVTEAVLSATYKALMDHHIYLEGTLLKPNMVTA 234
>SB_11670| Best HMM Match : TP2 (HMM E-Value=3.5)
Length = 543
Score = 31.5 bits (68), Expect = 0.47
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +2
Query: 80 RPALRPVQEGRLPLRQVALRAEDWP-QHPLVPSYPGKRQCSRPLRLHLSEPTHRANCRAQ 256
+P +R + R+ + +A++A + P P + S P K SRPL + T R N ++
Sbjct: 442 KPCVRKLGLARVTRKVMAVKAFERPLAGPSIDSGPAKTAPSRPLMNPAAALTRRRNLVSR 501
Query: 257 VLPDGEH 277
L D H
Sbjct: 502 TLSDNTH 508
>SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 6074
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 97 WAQRWARSSRPWVVHSSSDPNSGT 26
WAQ ++ SS PW S + SGT
Sbjct: 5909 WAQNYSSSSSPWAPSSPASVRSGT 5932
>SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)
Length = 687
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = +2
Query: 26 RPAVRIGRRMHHPGSGRPRPALRPVQEGRLPLRQ 127
RP +GR H PG P P + GR P Q
Sbjct: 394 RPPHELGRPPHEPGRPPHEPGRLPHEPGRPPYEQ 427
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 181 RKTPMFSPATPPSVRANASCQLSSP 255
R+T +FS PPS+ A AS L++P
Sbjct: 311 RQTMLFSATIPPSIEAMASRLLNAP 335
>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 1282
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = +2
Query: 26 RPAVRIGRRMHHPGSGRPRPALRPVQEGRLPLRQ 127
RP +GR H PG P P + GR P Q
Sbjct: 160 RPPHELGRPPHEPGRPPHEPGRLPHEPGRPPYEQ 193
>SB_20450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 556
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 156 CGQSSARNATWRSGSRPSCTGRSAGRGRPDPGWCIRL 46
CGQSS + +G+ CTG GR P IR+
Sbjct: 80 CGQSSKNSPAMLAGAGAVCTGLKNGRLSGPPCLSIRI 116
>SB_10368| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 413
Score = 27.5 bits (58), Expect = 7.6
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Frame = +2
Query: 29 PAVRIGRRMHHPGSGRPRPALRPVQEGRLP-----LRQVALRA-EDWPQHPLVPSYPGKR 190
PA+R M + RP PA+RPV R P L+ + L + E+W +PL+ K
Sbjct: 352 PAMRPLPAMRPLPAMRPLPAMRPVPAMRPPPAMYLLQDMPLESKEEWQLYPLLTIALAKI 411
Query: 191 QC 196
C
Sbjct: 412 DC 413
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,166,690
Number of Sequences: 59808
Number of extensions: 352669
Number of successful extensions: 1086
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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