Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0053
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28812| Best HMM Match : No HMM Matches (HMM E-Value=.)              95   3e-20
SB_3717| Best HMM Match : UQ_con (HMM E-Value=0.00017)                 62   4e-10
SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05)                 54   6e-08
SB_33407| Best HMM Match : UQ_con (HMM E-Value=0)                      54   6e-08
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)                      52   3e-07
SB_33408| Best HMM Match : UQ_con (HMM E-Value=3.7e-07)                49   2e-06
SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   9e-06
SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.)               46   2e-05
SB_15708| Best HMM Match : UQ_con (HMM E-Value=0)                      46   3e-05
SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39)                  42   4e-04
SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37)                40   0.002
SB_30411| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06)                38   0.005
SB_41157| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.050
SB_36444| Best HMM Match : UQ_con (HMM E-Value=2.8)                    33   0.15 
SB_3942| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.4  
SB_57003| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_56438| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  

>SB_28812| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 385

 Score = 95.5 bits (227), Expect = 3e-20
 Identities = 35/71 (49%), Positives = 52/71 (73%)
 Frame = +3

Query: 42  AEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITPNGRFKTNTRL 221
           A+P+  N+ EWH+ V+GP  + + GG YH +II P E+P KPPSI ++TPNGRF+   ++
Sbjct: 31  AQPLEDNLFEWHFTVRGPPDTEFAGGRYHGRIILPPEYPMKPPSIMLLTPNGRFEIGKKI 90

Query: 222 CLSITDFHPDT 254
           CLS++  HP+T
Sbjct: 91  CLSMSAHHPET 101



 Score = 36.7 bits (81), Expect = 0.012
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = +2

Query: 254 WNPAWSISTILTGLLSFMLEK-TPTLGSIETSEYQKRCLAAESLE 385
           W P+WSI T+L  ++ FM  K    +G+++ +  ++  LA +S+E
Sbjct: 102 WQPSWSIRTVLMAIIGFMPTKGAGAIGALDYTPKERAVLARKSME 146


>SB_3717| Best HMM Match : UQ_con (HMM E-Value=0.00017)
          Length = 123

 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 22/43 (51%), Positives = 31/43 (72%)
 Frame = +3

Query: 60  NILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMIT 188
           N+ EWH+ V+GP  + + GG YH +II P E+P KPPSI ++T
Sbjct: 2   NLFEWHFTVRGPPDTEFAGGRYHGRIILPPEYPMKPPSIMLLT 44


>SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05)
          Length = 200

 Score = 54.4 bits (125), Expect = 6e-08
 Identities = 22/50 (44%), Positives = 30/50 (60%)
 Frame = +3

Query: 21  DPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPP 170
           DP P  +A P   ++ EW+  + GP  S YEGG +   I FP ++PFKPP
Sbjct: 150 DPPPNCSAGPKGDDLYEWYSTILGPPGSVYEGGVFFLDIHFPSDYPFKPP 199


>SB_33407| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 226

 Score = 54.4 bits (125), Expect = 6e-08
 Identities = 22/50 (44%), Positives = 30/50 (60%)
 Frame = +3

Query: 21  DPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPP 170
           DP P  +A P   ++ EW+  + GP  S YEGG +   I FP ++PFKPP
Sbjct: 110 DPPPNCSAGPKGDDLYEWYSTILGPPGSVYEGGVFFLDIHFPSDYPFKPP 159


>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 1282

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
 Frame = +3

Query: 9    RLKNDPVPYVTAE-PVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMI 185
            +L  +PV   T E P  SN  EW   + GP  + Y GGY+   + FP ++P+ PP+   +
Sbjct: 1135 KLTEEPVEGFTVEVPDESNTFEWDVAIFGPPGTLYAGGYFKAHMSFPHDYPYSPPTFRFL 1194

Query: 186  TP--NGRFKTNTRLCLSITDFHP 248
            T   +     +  +C+SI   HP
Sbjct: 1195 TKMWHPNIYESGDVCISI--LHP 1215



 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 224  PQYYRLSSGHWNPAWSISTILTGLLSFMLE 313
            PQ   L S  WNP  ++ TIL  ++S + E
Sbjct: 1220 PQSGELPSERWNPTQNVRTILLSVISLLNE 1249


>SB_33408| Best HMM Match : UQ_con (HMM E-Value=3.7e-07)
          Length = 181

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 19/46 (41%), Positives = 27/46 (58%)
 Frame = +3

Query: 39  TAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSI 176
           +A P    + EW+  + GP  S YEGG +   I FP ++PFKPP +
Sbjct: 43  SAGPKGDKLYEWYSTILGPPGSVYEGGVFFLDIHFPTDYPFKPPKV 88


>SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 473

 Score = 47.2 bits (107), Expect = 9e-06
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
 Frame = +3

Query: 60  NILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP--NGRFKTNTRLCLSI 233
           ++ +W  +V GP  + YE GY+   ++FP+E+P +PP++  I+   +     N  +C+SI
Sbjct: 361 DLYKWEIMVVGPPGTYYEEGYFKASMVFPKEYPQRPPTLTFISDIWHPNVHKNGEVCISI 420


>SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
 Frame = +3

Query: 48  PVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITPNG---RFKTNT- 215
           P   +I + H ++ GP  +PYEGG+++  I  P ++P +PP + ++T      RF  N  
Sbjct: 5   PDKDDIPKIHALITGPFDTPYEGGFFYFLIRCPPDYPIRPPRVKLMTTGSGQVRFNPNLY 64

Query: 216 ---RLCLSI 233
              ++CLSI
Sbjct: 65  RNGKVCLSI 73


>SB_15708| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 145

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 20/40 (50%), Positives = 25/40 (62%)
 Frame = +3

Query: 57  SNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSI 176
           SNIL W  ++  PE  PY  G +  +I FP E+PFKPP I
Sbjct: 21  SNILYWQGLIV-PEMPPYNKGAFRIEICFPAEYPFKPPKI 59


>SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39)
          Length = 841

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +3

Query: 84  VKGPEKSPYEGGYYHXKIIFPREFPFKPP 170
           ++GP ++P+EGG Y+  I+ P  +PF PP
Sbjct: 693 IRGPPETPFEGGTYNLDIVIPETYPFNPP 721


>SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37)
          Length = 190

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +3

Query: 90  GPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP--NGRFKTNTRLCLSITDFHP 248
           G E +PY  G +   I  P  +PF+PP +  +TP  +    ++ R+CL      P
Sbjct: 4   GAEGTPYHKGIFKLDIQIPERYPFEPPKVRFVTPIYHPNIDSSGRICLDTLKMPP 58


>SB_30411| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 710

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
 Frame = +3

Query: 78  YVVK--GPEKSPYEGGYYHXKIIFPREFPFKPPSIYMIT 188
           ++VK  GP  +PYEGG +  ++  P ++PFK PSI   T
Sbjct: 50  FIVKFFGPVGTPYEGGVWKVRVDLPEKYPFKSPSIANFT 88


>SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06)
          Length = 739

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 81  VVKGPEKSPYEGGYYHXKIIFPREFPFKPPSI-YMITPNGRFKTN 212
           +++GP  +PY+ G +   I+ P  +P  PPS  Y+   NGR   N
Sbjct: 639 MIEGPAGTPYDHGLFAFDILLPANYPDAPPSFHYLSMCNGRLNPN 683


>SB_41157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 34.7 bits (76), Expect = 0.050
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = +2

Query: 356 KRCLAAESLEINIKNKMFCELFPEYVEEIEQQL 454
           KR  A  S   N+++++FCELFP+  EEI +++
Sbjct: 1   KRQYAVMSGPFNLQDRIFCELFPKIAEEIREKM 33


>SB_36444| Best HMM Match : UQ_con (HMM E-Value=2.8)
          Length = 55

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 81  VVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMIT 188
           +V GP  +PY  G +   I FP  +P  PP + +IT
Sbjct: 11  LVTGPVDTPYSRGCFVFDIFFPGTYPNVPPLVKLIT 46


>SB_3942| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 21/69 (30%), Positives = 33/69 (47%)
 Frame = -3

Query: 519 VAQSYFICTTVLIQQHASCRCFNCCSISSTYSGNNSQNILFFMFISRDSAAKHRFWYSEV 340
           + +S F      + ++ +CR  NC SIS T     SQ +    +       KH + + +V
Sbjct: 78  LVESLFDTKNKHVHRYYTCRFDNCSSISHT----ESQRVKHLTY-----KFKHDWLFEKV 128

Query: 339 SMDPNVGVF 313
           S D NVGV+
Sbjct: 129 SFDLNVGVW 137


>SB_57003| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 682

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +3

Query: 189 PNGRFKTNTRLCLSITDFHPD--TGTLLGLFLRSLQVC 296
           P+    T+  L ++ITD H +  TG  LGLF+  L +C
Sbjct: 9   PDTNSSTSDELMINITDPHEEENTGLYLGLFVVELIIC 46


>SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 897

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
 Frame = +3

Query: 39  TAEPVPSNILEWH---YVVKGPE---KSPYEGG--YYHXKIIFPREFPFKPPSIYMITP 191
           +AE V  N+ EW+   + + G     +   E G  +    I FP  FPF PP + ++ P
Sbjct: 755 SAELVDDNLFEWNVKLHTIDGDSLLYRDMVETGSKFILLNITFPENFPFAPPFMRVLAP 813


>SB_56438| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 359

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +3

Query: 261 LLGLFLRSLQVC*VLCWRRLLHWGPLKLQNTKSDV 365
           LL LF  ++ VC  L W R++  G +K QN ++DV
Sbjct: 210 LLSLF--TVSVCYSLIWYRIVQAGSIKGQNRQTDV 242


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,429,087
Number of Sequences: 59808
Number of extensions: 398046
Number of successful extensions: 1021
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)